Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84558 | Canola | nucleus | 93.78 | 94.49 |
| CDX75038 | Canola | nucleus | 78.61 | 71.82 |
| CDY43718 | Canola | mitochondrion, nucleus | 50.25 | 69.9 |
| AT2G36420.1 | Thale cress | nucleus | 74.13 | 67.88 |
| CDX84125 | Canola | nucleus | 65.17 | 65.34 |
| Solyc10g083530.1.1 | Tomato | nucleus | 33.58 | 34.44 |
| CDY11265 | Canola | nucleus | 41.54 | 33.81 |
| PGSC0003DMT400072630 | Potato | nucleus | 35.32 | 33.41 |
| CDX80882 | Canola | nucleus | 40.8 | 32.67 |
| KRG96149 | Soybean | nucleus | 41.29 | 32.05 |
| CDX70294 | Canola | nucleus | 39.8 | 31.62 |
| KRH67860 | Soybean | nucleus | 40.05 | 31.26 |
| PGSC0003DMT400006901 | Potato | nucleus | 35.07 | 28.83 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 37.81 | 28.68 |
| Solyc09g009220.2.1 | Tomato | nucleus | 33.83 | 28.22 |
| KRH20039 | Soybean | nucleus | 34.33 | 28.16 |
| KRH32670 | Soybean | nucleus | 34.08 | 27.57 |
| CDY10365 | Canola | nucleus | 40.05 | 25.6 |
Protein Annotations
| EnsemblPlants:CDX79680 | EnsemblPlantsGene:GSBRNA2T00132479001 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | ProteinID:CDX79680 | ProteinID:CDX79680.1 |
| SEG:seg | UniParc:UPI0004EEA2B9 | MapMan:35.2 | : | : | : |
Description
BnaC03g20160D
Coordinates
chrLK031818:+:1549348..1552306
Molecular Weight (calculated)
46009.5 Da
IEP (calculated)
4.665
GRAVY (calculated)
-0.879
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEKKKYLR ELLEDDQEPF HLNHYIADLR SQMGYSDLRV KKLKPQNAAV LPPGLFTCGE SSCFLATHHT NKSPLFELRS PPKEESSDSG VFLRIPARTA
101: EILLEAATRI QKQQSEKANK TNNTARNRGN AFGLFGSVLK RLTNRKAKPR SDNADKCFCE SPFHFVLHAT PSTSAQQTPQ FTSTATSPAR RSTEDEDSDE
201: TESLEKVRGQ DEEDKEEEDK EQCSPVSVLD PLEKEEDHHQ REVPDHLNLL SCSFEVVQRT KRRLLKKLCR FEKLAGMDPV DLEGKMSEEQ EEENEESVED
301: DNMRVYDLAE EYEDVDEAMA RESGWAEEER RKKWRMMNAW RLGMGAEEAA ETVVQKDIRG EAGEWTRHGG EVEEAVSEIE LSIFIFLIDE FSHELVSSFM
401: NK
101: EILLEAATRI QKQQSEKANK TNNTARNRGN AFGLFGSVLK RLTNRKAKPR SDNADKCFCE SPFHFVLHAT PSTSAQQTPQ FTSTATSPAR RSTEDEDSDE
201: TESLEKVRGQ DEEDKEEEDK EQCSPVSVLD PLEKEEDHHQ REVPDHLNLL SCSFEVVQRT KRRLLKKLCR FEKLAGMDPV DLEGKMSEEQ EEENEESVED
301: DNMRVYDLAE EYEDVDEAMA RESGWAEEER RKKWRMMNAW RLGMGAEEAA ETVVQKDIRG EAGEWTRHGG EVEEAVSEIE LSIFIFLIDE FSHELVSSFM
401: NK
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Arabidopsis Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.