Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75038 | Canola | nucleus | 89.28 | 81.36 |
| CDY43718 | Canola | mitochondrion, nucleus | 49.13 | 68.17 |
| AT2G36420.1 | Thale cress | nucleus | 72.57 | 66.29 |
| CDX79680 | Canola | nucleus | 65.34 | 65.17 |
| CDX84558 | Canola | nucleus | 63.84 | 64.16 |
| CDY11265 | Canola | nucleus | 39.9 | 32.39 |
| CDX80882 | Canola | nucleus | 39.4 | 31.47 |
| Solyc10g083530.1.1 | Tomato | nucleus | 30.42 | 31.12 |
| PGSC0003DMT400072630 | Potato | nucleus | 32.92 | 31.06 |
| CDX70294 | Canola | nucleus | 39.15 | 31.03 |
| KRH67860 | Soybean | nucleus | 37.41 | 29.13 |
| KRG96149 | Soybean | nucleus | 37.16 | 28.76 |
| Solyc09g009220.2.1 | Tomato | nucleus | 33.67 | 28.01 |
| PGSC0003DMT400006901 | Potato | nucleus | 32.92 | 26.99 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 34.91 | 26.42 |
| KRH20039 | Soybean | nucleus | 31.42 | 25.71 |
| CDY10365 | Canola | nucleus | 39.15 | 24.96 |
| KRH32670 | Soybean | nucleus | 30.17 | 24.35 |
Protein Annotations
| EnsemblPlants:CDX84125 | EnsemblPlantsGene:GSBRNA2T00141128001 | ncoils:Coil | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | ProteinID:CDX84125 |
| ProteinID:CDX84125.1 | SEG:seg | UniParc:UPI0004EF1FAA | MapMan:35.2 | : | : |
Description
BnaC04g08870D
Coordinates
chrLK031836:-:11748..13660
Molecular Weight (calculated)
45965.6 Da
IEP (calculated)
5.657
GRAVY (calculated)
-0.849
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEKKKHLH ELLEDDQEPF HLNHYISDLR SQMGCSTLRV KKRKSENATV LPPGFFSCER SCFFATYTNS PDPRKSPLFE LRSPANKKSR DGRVFLQIPT
101: RTAAILLEAA ARIQKQQVEK ADKTNNRARN RGNAFGMFGS VLKRLTNRKA KPCLHSADGN AVSSERESEQ TSSSTRRERL VEVDDKWFCE SPFHFVLHTT
201: PSTSGNRTPH FTSTATSPAR RSTEIHIIKC TSEIHSICEK LHLIKLNFDE SPRHFLFSAF KLRRFEKLAG LDPVDLEGKM SEEDEEEDEE SEEDDNVRVY
301: DSDEEYEDVD DAMARESGSA EEERRKKNDE RQKKWRMMNA WRVGMGAEED VDVVVQKDMR GESGEWTKHG GEVEEAVSDL ELSIFFFLID ELSHELVSSP
401: P
101: RTAAILLEAA ARIQKQQVEK ADKTNNRARN RGNAFGMFGS VLKRLTNRKA KPCLHSADGN AVSSERESEQ TSSSTRRERL VEVDDKWFCE SPFHFVLHTT
201: PSTSGNRTPH FTSTATSPAR RSTEIHIIKC TSEIHSICEK LHLIKLNFDE SPRHFLFSAF KLRRFEKLAG LDPVDLEGKM SEEDEEEDEE SEEDDNVRVY
301: DSDEEYEDVD DAMARESGSA EEERRKKNDE RQKKWRMMNA WRVGMGAEED VDVVVQKDMR GESGEWTKHG GEVEEAVSDL ELSIFFFLID ELSHELVSSP
401: P
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Arabidopsis Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.