Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g009220.2.1 | Tomato | nucleus | 82.62 | 83.82 |
| PGSC0003DMT400072630 | Potato | nucleus | 44.38 | 51.06 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 49.69 | 45.85 |
| KRH20039 | Soybean | nucleus | 42.74 | 42.65 |
| KRH32670 | Soybean | nucleus | 42.13 | 41.45 |
| KRG96149 | Soybean | nucleus | 43.35 | 40.93 |
| KRH67860 | Soybean | nucleus | 42.94 | 40.78 |
| CDY11265 | Canola | nucleus | 36.81 | 36.44 |
| Bra005776.1-P | Field mustard | nucleus | 36.81 | 36.36 |
| Bra009519.1-P | Field mustard | nucleus | 37.22 | 35.97 |
| CDX80882 | Canola | nucleus | 36.81 | 35.86 |
| AT5G03670.1 | Thale cress | nucleus | 37.83 | 35.85 |
| CDX84558 | Canola | nucleus | 29.24 | 35.84 |
| Bra023069.1-P | Field mustard | nucleus | 29.24 | 35.84 |
| CDX70294 | Canola | nucleus | 37.01 | 35.77 |
| CDX79680 | Canola | nucleus | 28.83 | 35.07 |
| Bra017237.1-P | Field mustard | nucleus | 29.24 | 34.62 |
| AT2G36420.1 | Thale cress | nucleus | 30.88 | 34.4 |
| CDX75038 | Canola | nucleus | 30.88 | 34.32 |
| CDY43718 | Canola | mitochondrion, nucleus | 20.04 | 33.91 |
| CDX84125 | Canola | nucleus | 26.99 | 32.92 |
| Bra005267.1-P | Field mustard | nucleus | 27.2 | 32.6 |
| CDY10365 | Canola | nucleus | 37.01 | 28.78 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006901 | EnsemblPlantsGene:PGSC0003DMG400002678 | EntrezGene:102590052 | InterPro:DUF4378 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| PFAM:PF14309 | PGSC:PGSC0003DMG400002678 | RefSeq:XP_006341154.1 | SEG:seg | UniParc:UPI000295F638 | UniProt:M0ZS47 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002678]
Coordinates
chr9:+:3685173..3689517
Molecular Weight (calculated)
56226.7 Da
IEP (calculated)
4.752
GRAVY (calculated)
-0.807
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKHLHELL QEDQEPFQLK HYIADRRCQL NRNPSKYSLQ TIKKQKSISS PSNTSTLLCK HACFFSSIRK NSDGNGSERL SPINFPISTK SPVRKVFLHI
101: PASTSSLLLE AAMRIQKQQN RPKLKKTQMG FGLFGSILKK FMNKKREVNN GIGMKKNEIV AELTSASCSC NHSRLSSAGW SESNEEKSMD FETSSSCRSE
201: NEEVENIEFG ICEKKYSSSP ISPFRFSLQK CPSSTGCRTP DFSSPAASPV RHKREDKENY EGLANIEQEE DEKEQCSPVS VLDPPFDDDG HECEYEDEDE
301: DEEDNDCGIE CNYALVQRAQ QQLLSKLRRF EKLAELDPIE LEKLMLEEEE EGNDDLEYDK ASLLSYRDRD FETFASEVTI PFDMKRLVSD LISEEKTETN
401: NSNNREEEVV FGRVCKRLDS WQHVRSDTID MMIELDFKTE LDDWKKFHEQ REEAALEVEV SIFRLLVEEL AEEMVHFGGH HGNFNKVLA
101: PASTSSLLLE AAMRIQKQQN RPKLKKTQMG FGLFGSILKK FMNKKREVNN GIGMKKNEIV AELTSASCSC NHSRLSSAGW SESNEEKSMD FETSSSCRSE
201: NEEVENIEFG ICEKKYSSSP ISPFRFSLQK CPSSTGCRTP DFSSPAASPV RHKREDKENY EGLANIEQEE DEKEQCSPVS VLDPPFDDDG HECEYEDEDE
301: DEEDNDCGIE CNYALVQRAQ QQLLSKLRRF EKLAELDPIE LEKLMLEEEE EGNDDLEYDK ASLLSYRDRD FETFASEVTI PFDMKRLVSD LISEEKTETN
401: NSNNREEEVV FGRVCKRLDS WQHVRSDTID MMIELDFKTE LDDWKKFHEQ REEAALEVEV SIFRLLVEEL AEEMVHFGGH HGNFNKVLA
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.