Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80882 | Canola | nucleus | 78.88 | 81.08 |
| Bra009519.1-P | Field mustard | nucleus | 78.68 | 80.24 |
| CDX70294 | Canola | nucleus | 78.49 | 80.04 |
| Bra005776.1-P | Field mustard | nucleus | 75.78 | 78.99 |
| CDY11265 | Canola | nucleus | 75.58 | 78.95 |
| CDY10365 | Canola | nucleus | 80.62 | 66.14 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 42.83 | 41.7 |
| KRH67860 | Soybean | nucleus | 41.28 | 41.36 |
| AT2G36420.1 | Thale cress | nucleus | 34.69 | 40.77 |
| KRG96149 | Soybean | nucleus | 40.7 | 40.54 |
| Solyc10g083530.1.1 | Tomato | nucleus | 29.84 | 39.29 |
| PGSC0003DMT400072630 | Potato | nucleus | 31.78 | 38.59 |
| KRH32670 | Soybean | nucleus | 36.82 | 38.23 |
| PGSC0003DMT400006901 | Potato | nucleus | 35.85 | 37.83 |
| KRH20039 | Soybean | nucleus | 35.85 | 37.76 |
| Solyc09g009220.2.1 | Tomato | nucleus | 34.69 | 37.14 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831763 | UniProt:A0A178UNJ0 | ProteinID:AED90640.1 | ArrayExpress:AT5G03670 | EnsemblPlantsGene:AT5G03670 |
| RefSeq:AT5G03670 | TAIR:AT5G03670 | RefSeq:AT5G03670-TAIR-G | EnsemblPlants:AT5G03670.1 | TAIR:AT5G03670.1 | Unigene:At.33244 |
| EMBL:BT004312 | EMBL:BT005624 | ProteinID:CAB82932.1 | ncoils:Coil | InterPro:DUF4378 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016740 | GO:GO:0032259 |
| RefSeq:NP_195987.1 | ProteinID:OAO95399.1 | PFAM:PF14309 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | UniProt:Q9LZS1 | UniParc:UPI000000C335 | SEG:seg |
Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
Coordinates
chr5:+:947146..950239
Molecular Weight (calculated)
59095.9 Da
IEP (calculated)
4.729
GRAVY (calculated)
-0.802
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.