Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96149 | Soybean | nucleus | 83.11 | 82.63 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 53.2 | 51.7 |
| KRH32670 | Soybean | nucleus | 47.18 | 48.89 |
| KRH20039 | Soybean | nucleus | 46.21 | 48.57 |
| Solyc10g083530.1.1 | Tomato | nucleus | 33.01 | 43.37 |
| PGSC0003DMT400006901 | Potato | nucleus | 40.78 | 42.94 |
| CDX80882 | Canola | nucleus | 41.75 | 42.83 |
| Bra005776.1-P | Field mustard | nucleus | 41.16 | 42.83 |
| PGSC0003DMT400072630 | Potato | nucleus | 35.15 | 42.59 |
| CDY11265 | Canola | nucleus | 40.78 | 42.51 |
| Solyc09g009220.2.1 | Tomato | nucleus | 39.42 | 42.12 |
| AT2G36420.1 | Thale cress | nucleus | 35.34 | 41.46 |
| AT5G03670.1 | Thale cress | nucleus | 41.36 | 41.28 |
| CDX84558 | Canola | nucleus | 31.65 | 40.85 |
| Bra023069.1-P | Field mustard | nucleus | 31.65 | 40.85 |
| Bra009519.1-P | Field mustard | nucleus | 39.61 | 40.32 |
| CDX75038 | Canola | nucleus | 34.37 | 40.23 |
| Bra017237.1-P | Field mustard | nucleus | 32.23 | 40.19 |
| CDX79680 | Canola | nucleus | 31.26 | 40.05 |
| CDX70294 | Canola | nucleus | 38.64 | 39.33 |
| Bra005267.1-P | Field mustard | nucleus | 30.87 | 38.97 |
| CDY43718 | Canola | mitochondrion, nucleus | 21.36 | 38.06 |
| CDX84125 | Canola | nucleus | 29.13 | 37.41 |
| CDY10365 | Canola | nucleus | 39.61 | 32.43 |
Protein Annotations
| EMBL:ACUP02002085 | EnsemblPlants:KRH67860 | EnsemblPlantsGene:GLYMA_03G192000 | EntrezGene:100790018 | ncoils:Coil | PANTHER:PTHR33623 |
| PANTHER:PTHR33623:SF5 | ProteinID:KRH67860 | ProteinID:KRH67860.1 | SEG:seg | UniParc:UPI00023C1E06 | UniProt:I1JPY2 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:40272376..40276006
Molecular Weight (calculated)
59374.1 Da
IEP (calculated)
4.653
GRAVY (calculated)
-0.878
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKYLHELL EEDQEPFFLN KYISDRRTQM KRPSPKTSLQ VKKRKSTNPN TNFPRNLCKS ACLFSLTDTP DLRKSPLFEF TSPVKSPCKS PNAIFLHIPS
101: RTAALLLEAA LRIQKHSSHV TSKPKTKAHS FGLFGSLYKR LTQRNQKKHE IESGGGVKIS VKDVLKWDSS VGRRKVSKAN GKCKEQEETV NVNVNVNTCS
201: YNGSSALWSE SNEDNKSLDM ETSSSGYYSE EIHFVTNHKQ YSTCFCESPF RFVLQTSSPS SGHHTPELPS PSRHPTEEKE SNEGESVKKF ESGEEEEEDK
301: EQCSPVSVLD PPFEDDDEGH GNGDEEEEEE GGFDMECSYA IVQRAKQQLL YKLCRFEKLA ELDPVELEKR MQDQEEDEDE TFMEEEHGDD ENNQASYKEN
401: DFIELIFQAL CQSRVHDRQQ IPEDFKKLVS DLIMEEERAL DSLEDRDMVI RRICKRLELW KEVESNTIDM MIEDDFSRED GVWRKNIEQI RNMAGELELA
501: IFGFLVEEFS EELVC
101: RTAALLLEAA LRIQKHSSHV TSKPKTKAHS FGLFGSLYKR LTQRNQKKHE IESGGGVKIS VKDVLKWDSS VGRRKVSKAN GKCKEQEETV NVNVNVNTCS
201: YNGSSALWSE SNEDNKSLDM ETSSSGYYSE EIHFVTNHKQ YSTCFCESPF RFVLQTSSPS SGHHTPELPS PSRHPTEEKE SNEGESVKKF ESGEEEEEDK
301: EQCSPVSVLD PPFEDDDEGH GNGDEEEEEE GGFDMECSYA IVQRAKQQLL YKLCRFEKLA ELDPVELEKR MQDQEEDEDE TFMEEEHGDD ENNQASYKEN
401: DFIELIFQAL CQSRVHDRQQ IPEDFKKLVS DLIMEEERAL DSLEDRDMVI RRICKRLELW KEVESNTIDM MIEDDFSRED GVWRKNIEQI RNMAGELELA
501: IFGFLVEEFS EELVC
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.