Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072630 | Potato | nucleus | 86.73 | 80.0 |
| Solyc09g009220.2.1 | Tomato | nucleus | 51.02 | 41.49 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 48.72 | 36.04 |
| CDX84558 | Canola | nucleus | 35.97 | 35.34 |
| Bra023069.1-P | Field mustard | nucleus | 35.97 | 35.34 |
| AT2G36420.1 | Thale cress | nucleus | 38.27 | 34.17 |
| CDX79680 | Canola | nucleus | 34.44 | 33.58 |
| Bra017237.1-P | Field mustard | nucleus | 35.2 | 33.41 |
| CDX75038 | Canola | nucleus | 37.24 | 33.18 |
| KRH67860 | Soybean | nucleus | 43.37 | 33.01 |
| KRG96149 | Soybean | nucleus | 43.11 | 32.63 |
| Bra005267.1-P | Field mustard | nucleus | 32.91 | 31.62 |
| CDY11265 | Canola | nucleus | 39.8 | 31.58 |
| KRH20039 | Soybean | nucleus | 39.29 | 31.43 |
| Bra005776.1-P | Field mustard | nucleus | 39.54 | 31.31 |
| CDX80882 | Canola | nucleus | 40.05 | 31.27 |
| CDY43718 | Canola | mitochondrion, nucleus | 22.96 | 31.14 |
| CDX84125 | Canola | nucleus | 31.12 | 30.42 |
| KRH32670 | Soybean | nucleus | 38.27 | 30.18 |
| Bra009519.1-P | Field mustard | nucleus | 38.78 | 30.04 |
| AT5G03670.1 | Thale cress | nucleus | 39.29 | 29.84 |
| CDX70294 | Canola | nucleus | 38.01 | 29.45 |
| CDY10365 | Canola | nucleus | 38.52 | 24.01 |
Protein Annotations
| EnsemblPlants:Solyc10g083530.1.1 | EnsemblPlantsGene:Solyc10g083530.1 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | SEG:seg | UniParc:UPI0002769F22 |
| UniProt:K4D3E0 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:63321909..63325177
Molecular Weight (calculated)
44933.6 Da
IEP (calculated)
4.379
GRAVY (calculated)
-0.686
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MALKHLHELL EEDQEPFYIA NKRFHDQKPP SKLCKNTCFF SFGESPELRK SPLCLSSPAP AKSPEIEKFV LNVPATTAAL LLEAAIRIQK QQSSSKSKTQ
101: IKKVKFGGFG SILKKLKNRN SDKNGEKSFT CSCINSRVNT EISEEKLMDL ENYGDFGSSP LSPFRFSLQR CPSSSGELLP GFTSPAASPV YHTKEDKENY
201: ETILGLASIE QLEEEDKEQC SPVSVLDPPF EEEDERENED EDEDEDENLD CNYALVQRAQ QQLFCKLRRF EKLAELDPIE LEKILLEEEE EDRAEEEEYQ
301: VSNLIFEEKI EVKSLNYGEA VFGRECKKID LSSQELRSNN IDMMVKSNLK NEFDDWNEFK DQREEIAIEF AFSIFGLLVH ELGEELIHLA HS
101: IKKVKFGGFG SILKKLKNRN SDKNGEKSFT CSCINSRVNT EISEEKLMDL ENYGDFGSSP LSPFRFSLQR CPSSSGELLP GFTSPAASPV YHTKEDKENY
201: ETILGLASIE QLEEEDKEQC SPVSVLDPPF EEEDERENED EDEDEDENLD CNYALVQRAQ QQLFCKLRRF EKLAELDPIE LEKILLEEEE EDRAEEEEYQ
301: VSNLIFEEKI EVKSLNYGEA VFGRECKKID LSSQELRSNN IDMMVKSNLK NEFDDWNEFK DQREEIAIEF AFSIFGLLVH ELGEELIHLA HS
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Arabidopsis Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.