Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023069.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX79680 | Canola | nucleus | 94.49 | 93.78 |
| CDX75038 | Canola | nucleus | 77.69 | 70.45 |
| CDY43718 | Canola | mitochondrion, nucleus | 50.63 | 69.9 |
| AT2G36420.1 | Thale cress | nucleus | 74.69 | 67.88 |
| CDX84125 | Canola | nucleus | 64.16 | 63.84 |
| Solyc10g083530.1.1 | Tomato | nucleus | 35.34 | 35.97 |
| PGSC0003DMT400072630 | Potato | nucleus | 36.84 | 34.59 |
| CDY11265 | Canola | nucleus | 42.36 | 34.21 |
| CDX80882 | Canola | nucleus | 41.6 | 33.07 |
| KRG96149 | Soybean | nucleus | 41.85 | 32.24 |
| KRH67860 | Soybean | nucleus | 40.85 | 31.65 |
| CDX70294 | Canola | nucleus | 40.1 | 31.62 |
| PGSC0003DMT400006901 | Potato | nucleus | 35.84 | 29.24 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 38.6 | 29.06 |
| KRH20039 | Soybean | nucleus | 35.09 | 28.57 |
| Solyc09g009220.2.1 | Tomato | nucleus | 34.34 | 28.42 |
| KRH32670 | Soybean | nucleus | 34.59 | 27.77 |
| CDY10365 | Canola | nucleus | 40.1 | 25.44 |
Protein Annotations
| EnsemblPlants:CDX84558 | EnsemblPlantsGene:GSBRNA2T00141811001 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | ProteinID:CDX84558 | ProteinID:CDX84558.1 |
| SEG:seg | UniParc:UPI000253FF17 | MapMan:35.2 | : | : | : |
Description
BnaA03g16720D
Coordinates
chrLK031838:-:65087..67591
Molecular Weight (calculated)
45695.2 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.869
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEKKKHLR ELLEDDQEPF HLNHYIADLR SQMGYSDLRV KKLKPQNAAV LPPGFFTCGE SSCFLATHHT NKSPLFELRS PSKKESSDGQ VFLRIPARTA
101: AILLEAATRI QKQQSEKANK TNNRGNAFGL FGSVLKRLTN RKAKPRSDNA DKCFCESPFH FVLHATPSTS SQQTPQFTST ATSPARRSTE DEDSDETESL
201: EKVRGQDEED KEEEDKEQCS PVSVLDPLEK EEDHHQREVP DHLNLLSCSF EVVQRTKRRR LLKKLCRFEK LAGMDPVDLE GKMSEEQEEE NEESVEDDNM
301: RVYDLAEEYE DMDEAMARES GWVEEERTKK WRMMNAWRLG MGAEEAAEAV VQKDIRGEAG EWTRHGGEVE EAVSEIELSI FIFLIDEFSH ELVSSFMNE
101: AILLEAATRI QKQQSEKANK TNNRGNAFGL FGSVLKRLTN RKAKPRSDNA DKCFCESPFH FVLHATPSTS SQQTPQFTST ATSPARRSTE DEDSDETESL
201: EKVRGQDEED KEEEDKEQCS PVSVLDPLEK EEDHHQREVP DHLNLLSCSF EVVQRTKRRR LLKKLCRFEK LAGMDPVDLE GKMSEEQEEE NEESVEDDNM
301: RVYDLAEEYE DMDEAMARES GWVEEERTKK WRMMNAWRLG MGAEEAAEAV VQKDIRGEAG EWTRHGGEVE EAVSEIELSI FIFLIDEFSH ELVSSFMNE
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Arabidopsis Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.