Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005267.1-P | Field mustard | nucleus | 90.0 | 97.06 |
| CDX84125 | Canola | nucleus | 81.36 | 89.28 |
| CDY43718 | Canola | mitochondrion, nucleus | 55.91 | 85.12 |
| AT2G36420.1 | Thale cress | nucleus | 78.86 | 79.04 |
| CDX79680 | Canola | nucleus | 71.82 | 78.61 |
| CDX84558 | Canola | nucleus | 70.45 | 77.69 |
| CDY11265 | Canola | nucleus | 42.5 | 37.85 |
| Solyc10g083530.1.1 | Tomato | nucleus | 33.18 | 37.24 |
| PGSC0003DMT400072630 | Potato | nucleus | 35.45 | 36.71 |
| CDX80882 | Canola | nucleus | 41.59 | 36.45 |
| CDX70294 | Canola | nucleus | 40.23 | 34.98 |
| KRH67860 | Soybean | nucleus | 40.23 | 34.37 |
| KRG96149 | Soybean | nucleus | 39.77 | 33.78 |
| Solyc09g009220.2.1 | Tomato | nucleus | 34.32 | 31.33 |
| PGSC0003DMT400006901 | Potato | nucleus | 34.32 | 30.88 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 36.82 | 30.57 |
| KRH20039 | Soybean | nucleus | 33.41 | 30.0 |
| KRH32670 | Soybean | nucleus | 32.27 | 28.57 |
| CDY10365 | Canola | nucleus | 40.0 | 27.98 |
Protein Annotations
| EnsemblPlants:CDX75038 | EnsemblPlantsGene:GSBRNA2T00117067001 | ncoils:Coil | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | ProteinID:CDX75038 |
| ProteinID:CDX75038.1 | SEG:seg | UniParc:UPI0004EED348 | MapMan:35.2 | : | : |
Description
BnaA05g07840D
Coordinates
chrLK031802:-:2109934..2112456
Molecular Weight (calculated)
50174.8 Da
IEP (calculated)
4.647
GRAVY (calculated)
-1.023
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEKKKHLH ELLEDDQEPF HLNHYISDLR SQMGCSTLRV KKRKSENATV LPPGFFSCER SCFFATYTNS PDPRKSPLFE LRSPANKKSR DGRVFLQIPT
101: RTAAILLEAA ARIQKQQVEK ADKTNNRARN RGNAFGMFGS VLKRLTNRKA KPCLHSADGN AVLSERGSEP TSSSSRRERL VEVDDKWFCE SPFHFVLHTT
201: PSTSGNRTPH FTSTATSPAR RSTEDEDSDE TESLEKVRGQ GEEDKEEEDK EQCSPVSVLD PLEEEEDDED HHQREPDHIN LPPCSFEVVQ RAKRRLLKKL
301: RRFEKLAGLD PVDLEGKMSE EDEEEDEESE EDDNVRVYDS DEEYDDVDDD AMAGESGSAE EERKKKNEEG QKKWRMMHAW RVGMGAEEDV DVVVQKDMRG
401: EAGEWTKHGG EVEEAVSDLE LSIFFFLIDE LSHELVSSPP
101: RTAAILLEAA ARIQKQQVEK ADKTNNRARN RGNAFGMFGS VLKRLTNRKA KPCLHSADGN AVLSERGSEP TSSSSRRERL VEVDDKWFCE SPFHFVLHTT
201: PSTSGNRTPH FTSTATSPAR RSTEDEDSDE TESLEKVRGQ GEEDKEEEDK EQCSPVSVLD PLEEEEDDED HHQREPDHIN LPPCSFEVVQ RAKRRLLKKL
301: RRFEKLAGLD PVDLEGKMSE EDEEEDEESE EDDNVRVYDS DEEYDDVDDD AMAGESGSAE EERKKKNEEG QKKWRMMHAW RVGMGAEEDV DVVVQKDMRG
401: EAGEWTKHGG EVEEAVSDLE LSIFFFLIDE LSHELVSSPP
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Arabidopsis Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.