Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11265 | Canola | nucleus | 89.64 | 91.09 |
| AT5G03670.1 | Thale cress | nucleus | 81.08 | 78.88 |
| CDX70294 | Canola | nucleus | 79.48 | 78.85 |
| CDY10365 | Canola | nucleus | 80.88 | 64.55 |
| KRH67860 | Soybean | nucleus | 42.83 | 41.75 |
| CDX84558 | Canola | nucleus | 33.07 | 41.6 |
| CDX75038 | Canola | nucleus | 36.45 | 41.59 |
| KRG96149 | Soybean | nucleus | 42.83 | 41.51 |
| CDX79680 | Canola | nucleus | 32.67 | 40.8 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 42.63 | 40.38 |
| Solyc10g083530.1.1 | Tomato | nucleus | 31.27 | 40.05 |
| CDX84125 | Canola | nucleus | 31.47 | 39.4 |
| PGSC0003DMT400072630 | Potato | nucleus | 33.07 | 39.06 |
| KRH20039 | Soybean | nucleus | 36.45 | 37.35 |
| KRH32670 | Soybean | nucleus | 36.85 | 37.22 |
| CDY43718 | Canola | mitochondrion, nucleus | 21.31 | 37.02 |
| PGSC0003DMT400006901 | Potato | nucleus | 35.86 | 36.81 |
| Solyc09g009220.2.1 | Tomato | nucleus | 34.66 | 36.1 |
Protein Annotations
| EnsemblPlants:CDX80882 | EnsemblPlantsGene:GSBRNA2T00134281001 | InterPro:DUF4378 | ncoils:Coil | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| PFAM:PF14309 | ProteinID:CDX80882 | ProteinID:CDX80882.1 | SEG:seg | UniParc:UPI0004EE6EDA | MapMan:35.2 |
Description
BnaC03g01360D
Coordinates
chrLK031823:+:609288..611852
Molecular Weight (calculated)
57051.6 Da
IEP (calculated)
4.707
GRAVY (calculated)
-0.804
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQKHLKDL LEEDQEPFQL QSYISDRRRQ ITHLQVKKSR PVSQNAGLPS RFCRNACFFS QRESPDPKKS PLFEPKSPNR SQNAIFVNIP ARTASMLLEA
101: AVRIQKQSSE GSKTKTRNVG NAFGIFGSVL KKLTHRKKRE ISGGGVSSVK DMLRWESPAV RKIVTKRKGE EENCCQTQKN ASEKQFSRRS SSSGVWSESV
201: TNGERSWECD FEPSISSSSG SDGLDELACG LMNGSDLSED KRFCESPFHF VLQTTMPSPG GFRTPNFTSP AASPRHDCPE MKKDSYEVEK LKKQEVEEEE
301: EDKEQSSPVS VLDPPFEDDD EDIHMDDNNI TSSFRSVQKA KHLLLQKLCR FEQLAGLDPL ELEETMYDQV TEEDSEEEEM INHYQREIIT QTVLKTYFED
401: MAKVPEGIEA LISDLVAEEL QNNSMLQDGE AQVSKRVCER LRSWRDVESN TIDMMVEHDF RTERLGSWRS KNDAQVAEAV VEIEFEIFEG LVEELSQDIG
501: GN
101: AVRIQKQSSE GSKTKTRNVG NAFGIFGSVL KKLTHRKKRE ISGGGVSSVK DMLRWESPAV RKIVTKRKGE EENCCQTQKN ASEKQFSRRS SSSGVWSESV
201: TNGERSWECD FEPSISSSSG SDGLDELACG LMNGSDLSED KRFCESPFHF VLQTTMPSPG GFRTPNFTSP AASPRHDCPE MKKDSYEVEK LKKQEVEEEE
301: EDKEQSSPVS VLDPPFEDDD EDIHMDDNNI TSSFRSVQKA KHLLLQKLCR FEQLAGLDPL ELEETMYDQV TEEDSEEEEM INHYQREIIT QTVLKTYFED
401: MAKVPEGIEA LISDLVAEEL QNNSMLQDGE AQVSKRVCER LRSWRDVESN TIDMMVEHDF RTERLGSWRS KNDAQVAEAV VEIEFEIFEG LVEELSQDIG
501: GN
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.