Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70294 | Canola | nucleus | 73.77 | 91.7 |
| CDX80882 | Canola | nucleus | 64.55 | 80.88 |
| AT5G03670.1 | Thale cress | nucleus | 66.14 | 80.62 |
| CDY11265 | Canola | nucleus | 61.69 | 78.54 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 34.02 | 40.38 |
| CDX84558 | Canola | nucleus | 25.44 | 40.1 |
| CDX79680 | Canola | nucleus | 25.6 | 40.05 |
| CDX75038 | Canola | nucleus | 27.98 | 40.0 |
| KRH67860 | Soybean | nucleus | 32.43 | 39.61 |
| KRG96149 | Soybean | nucleus | 32.43 | 39.38 |
| CDX84125 | Canola | nucleus | 24.96 | 39.15 |
| Solyc10g083530.1.1 | Tomato | nucleus | 24.01 | 38.52 |
| PGSC0003DMT400072630 | Potato | nucleus | 25.76 | 38.12 |
| KRH20039 | Soybean | nucleus | 28.93 | 37.14 |
| PGSC0003DMT400006901 | Potato | nucleus | 28.78 | 37.01 |
| KRH32670 | Soybean | nucleus | 29.09 | 36.82 |
| CDY43718 | Canola | mitochondrion, nucleus | 16.85 | 36.68 |
| Solyc09g009220.2.1 | Tomato | nucleus | 27.98 | 36.51 |
Protein Annotations
| EnsemblPlants:CDY10365 | EnsemblPlantsGene:GSBRNA2T00032266001 | InterPro:DUF4378 | ncoils:Coil | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| PFAM:PF14309 | ProteinID:CDY10365 | ProteinID:CDY10365.1 | SEG:seg | UniParc:UPI0004EE95FB | UniProt:A0A078F777 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng02660DBnaCnng02660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F777]
Coordinates
chrLK032003:-:69940..73040
Molecular Weight (calculated)
70766.5 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.718
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INPPATHLQV KKRRAISQNA GLPSRFCRNA CFFSLRESPD QKKSPLFEPK SPNRSKNAVF VNIPARTASM
101: LLEAAVRIQK QSSSEGSKTR TRNAGNAFGI FGSVLKKLTH RKKREISGGN DGDRVSSVKD MLRWESPVVR KIVTRKSKRE TQNHASESQF SRRSSSSGVW
201: SESVINEQRS YDCDFETSIS SRSGSDGLDE FASEIMDGAD FSEDKRFCES PFHFVLETMP SNSGFRTPNF SSPAASPRLD CQEMKKESYE VEEEEEEDKE
301: QSSPVSVLDP PFQDDDEDIH MDDNNITSSF RSIQKAKHLL LQKLCRFEQL AGLDPLELEK RMSDQENEEE EEVKNHYQCE IITQRVVKTY FEDMKEVPEG
401: IEALISDLVA EELHKDSFMQ GGEAQVAKRV CERLRSWRDV ESNTIDMMVE HDFRIESLGT WRSKNDSEVA EVVLDIEFEI FEDLVEELEL SQDIGGGRTE
501: KFIGPVKLSN LSGRVLTLMG TRVGSSSELG SCKCKTQTDV KCKSKSTSNA TSPAAFQSAI HTASHGSSPA LVTSSSTSSD LVTENVEGGV FGSHFAALQS
601: EFSGFEMEDP SQKLEQLNQH KKFKKCSGF
101: LLEAAVRIQK QSSSEGSKTR TRNAGNAFGI FGSVLKKLTH RKKREISGGN DGDRVSSVKD MLRWESPVVR KIVTRKSKRE TQNHASESQF SRRSSSSGVW
201: SESVINEQRS YDCDFETSIS SRSGSDGLDE FASEIMDGAD FSEDKRFCES PFHFVLETMP SNSGFRTPNF SSPAASPRLD CQEMKKESYE VEEEEEEDKE
301: QSSPVSVLDP PFQDDDEDIH MDDNNITSSF RSIQKAKHLL LQKLCRFEQL AGLDPLELEK RMSDQENEEE EEVKNHYQCE IITQRVVKTY FEDMKEVPEG
401: IEALISDLVA EELHKDSFMQ GGEAQVAKRV CERLRSWRDV ESNTIDMMVE HDFRIESLGT WRSKNDSEVA EVVLDIEFEI FEDLVEELEL SQDIGGGRTE
501: KFIGPVKLSN LSGRVLTLMG TRVGSSSELG SCKCKTQTDV KCKSKSTSNA TSPAAFQSAI HTASHGSSPA LVTSSSTSSD LVTENVEGGV FGSHFAALQS
601: EFSGFEMEDP SQKLEQLNQH KKFKKCSGF
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.