Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005776.1-P | Field mustard | nucleus | 97.17 | 96.97 |
| CDX80882 | Canola | nucleus | 91.09 | 89.64 |
| AT5G03670.1 | Thale cress | nucleus | 78.95 | 75.58 |
| CDX70294 | Canola | nucleus | 77.33 | 75.49 |
| CDY10365 | Canola | nucleus | 78.54 | 61.69 |
| CDX75038 | Canola | nucleus | 37.85 | 42.5 |
| CDX84558 | Canola | nucleus | 34.21 | 42.36 |
| CDX79680 | Canola | nucleus | 33.81 | 41.54 |
| KRG96149 | Soybean | nucleus | 42.91 | 40.93 |
| KRH67860 | Soybean | nucleus | 42.51 | 40.78 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 43.32 | 40.38 |
| CDX84125 | Canola | nucleus | 32.39 | 39.9 |
| Solyc10g083530.1.1 | Tomato | nucleus | 31.58 | 39.8 |
| CDY43718 | Canola | mitochondrion, nucleus | 22.47 | 38.41 |
| PGSC0003DMT400072630 | Potato | nucleus | 33.0 | 38.35 |
| KRH20039 | Soybean | nucleus | 36.64 | 36.94 |
| PGSC0003DMT400006901 | Potato | nucleus | 36.44 | 36.81 |
| KRH32670 | Soybean | nucleus | 36.44 | 36.22 |
| Solyc09g009220.2.1 | Tomato | nucleus | 34.62 | 35.48 |
Protein Annotations
| EnsemblPlants:CDY11265 | EnsemblPlantsGene:GSBRNA2T00049295001 | InterPro:DUF4378 | ncoils:Coil | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| PFAM:PF14309 | ProteinID:CDY11265 | ProteinID:CDY11265.1 | SEG:seg | UniParc:UPI0004EE03A4 | UniProt:A0A078FA02 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA03g01010DBnaA03g01010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA02]
Coordinates
chrLK032010:+:431918..434646
Molecular Weight (calculated)
56112.5 Da
IEP (calculated)
4.658
GRAVY (calculated)
-0.778
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPRHLKDL LEEDQEPFQL QSYISDRRRQ ITHLQVKKRR PVSQIAGLPS RFCRNACFFS LRESPDPKKS PLFEPKSPNR SQNAIFVNIP ARTASMLLEA
101: AVRIQKQSSE GSKTKTRNVG NAFGIFGSVL KKLTHRKKRE ISGGGVSSVK DMLRWESPVV RKIVTKRKGE EQNSSQTQKT ASEKQFSRRS SSSGVWSESV
201: TNGERSWECD FEPSISSSSG SDGLDELACG LMNGSDLSED KRFCESPFHF VLQTTISSPG GFRTPNFTSP AASPRHDCPE MKKDSYEVEK LKKLEVEEEE
301: EEEDKEQSSP VSVLDPPFED DDEDIHMDDN NITSSFRSVQ KAKHLLLQKL CRFEQLAGLD PLELEETMSD QVTEEDSEEE EMRVLKTYFE DMTKVPEGIE
401: ALISDLVAEE LQYNSLLQDG EPQVAKSVCE RLRSWRDVES NTIDMMVEHD FRTERLGSWR SKNEAEVAEA VVEIEFEIFE DLVEELSQDI GGNR
101: AVRIQKQSSE GSKTKTRNVG NAFGIFGSVL KKLTHRKKRE ISGGGVSSVK DMLRWESPVV RKIVTKRKGE EQNSSQTQKT ASEKQFSRRS SSSGVWSESV
201: TNGERSWECD FEPSISSSSG SDGLDELACG LMNGSDLSED KRFCESPFHF VLQTTISSPG GFRTPNFTSP AASPRHDCPE MKKDSYEVEK LKKLEVEEEE
301: EEEDKEQSSP VSVLDPPFED DDEDIHMDDN NITSSFRSVQ KAKHLLLQKL CRFEQLAGLD PLELEETMSD QVTEEDSEEE EMRVLKTYFE DMTKVPEGIE
401: ALISDLVAEE LQYNSLLQDG EPQVAKSVCE RLRSWRDVES NTIDMMVEHD FRTERLGSWR SKNEAEVAEA VVEIEFEIFE DLVEELSQDI GGNR
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.