Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005267.1-P | Field mustard | nucleus | 73.8 | 79.41 |
| CDX75038 | Canola | nucleus | 79.04 | 78.86 |
| CDY43718 | Canola | mitochondrion, nucleus | 50.8 | 77.16 |
| Bra023069.1-P | Field mustard | nucleus | 67.88 | 74.69 |
| CDX84558 | Canola | nucleus | 67.88 | 74.69 |
| CDX79680 | Canola | nucleus | 67.88 | 74.13 |
| Bra017237.1-P | Field mustard | nucleus | 69.7 | 74.09 |
| CDX84125 | Canola | nucleus | 66.29 | 72.57 |
| Solyc10g083530.1.1 | Tomato | nucleus | 34.17 | 38.27 |
| PGSC0003DMT400072630 | Potato | nucleus | 35.99 | 37.18 |
| KRG96149 | Soybean | nucleus | 41.91 | 35.52 |
| KRH67860 | Soybean | nucleus | 41.46 | 35.34 |
| AT5G03670.1 | Thale cress | nucleus | 40.77 | 34.69 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 38.04 | 31.51 |
| PGSC0003DMT400006901 | Potato | nucleus | 34.4 | 30.88 |
| KRH20039 | Soybean | nucleus | 33.94 | 30.41 |
| Solyc09g009220.2.1 | Tomato | nucleus | 33.26 | 30.29 |
| KRH32670 | Soybean | nucleus | 33.03 | 29.18 |
Protein Annotations
| ArrayExpress:AT2G36420 | EnsemblPlants:AT2G36420.1 | EnsemblPlantsGene:AT2G36420 | EntrezGene:818216 | GO:GO:0008150 | ncoils:Coil |
| PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | PO:PO:0000293 | ProteinID:AAD24626.1 | ProteinID:AEC09252.1 | RefSeq:AT2G36420 |
| RefSeq:AT2G36420-TAIR-G | RefSeq:NP_181183.1 | SEG:seg | TAIR:AT2G36420 | TAIR:AT2G36420.1 | UniParc:UPI00000A946C |
| UniProt:Q9SJR3 | MapMan:35.2 | : | : | : | : |
Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
Coordinates
chr2:+:15286121..15289107
Molecular Weight (calculated)
50593.5 Da
IEP (calculated)
4.671
GRAVY (calculated)
-1.051
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.