Factsheet for Bra010170.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26900	Canola	cytosol, mitochondrion, nucleus	100.0	100.0
Bra037758.1-P	Field mustard	nucleus	66.32	32.81
AT5G63900.1	Thale cress	nucleus	63.86	32.67
Bra024246.1-P	Field mustard	nucleus	44.21	26.75
KXG31496	Sorghum	cytosol, extracellular	7.72	20.95
Zm00001d008232_P001	Maize	cytosol	22.11	19.69
Bra002633.1-P	Field mustard	plastid	22.46	15.17
KRH52096	Soybean	nucleus	31.93	15.07
TraesCS2A01G085100.1	Wheat	nucleus	29.47	13.04
TraesCS2D01G083000.1	Wheat	nucleus	29.47	13.0
TraesCS2B01G099800.1	Wheat	nucleus	28.07	12.21
Bra020653.1-P	Field mustard	nucleus	23.16	11.13
Zm00001d022583_P001	Maize	nucleus	26.32	10.71
GSMUA_AchrUn_...	Banana	nucleus	29.47	8.73
Bra017181.1-P	Field mustard	nucleus	22.81	8.1
GSMUA_Achr6P32880_001	Banana	nucleus	28.07	7.55
Bra017226.1-P	Field mustard	nucleus	24.56	6.72
HORVU4Hr1G056300.1	Barley	extracellular	4.21	6.63
Bra035350.1-P	Field mustard	nucleus	23.51	6.37
TraesCS4B01G194600.1	Wheat	nucleus	30.18	6.34
TraesCS4D01G195300.1	Wheat	nucleus	30.18	6.34
TraesCS4A01G109600.1	Wheat	nucleus	30.18	6.33
Bra027290.1-P	Field mustard	nucleus	23.86	6.1
Zm00001d028749_P002	Maize	mitochondrion	27.02	6.05
Bra011988.1-P	Field mustard	nucleus	21.05	5.98
Bra034381.1-P	Field mustard	nucleus	22.11	5.89
Bra002634.1-P	Field mustard	endoplasmic reticulum, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:Bra010170.1	EnsemblPlants:Bra010170.1-P	EnsemblPlantsGene:Bra010170	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013083	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42672
PANTHER:PTHR42672:SF9	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000253F7DC	UniProt:M4D121	MapMan:15.5.30

Description

AT5G63900 (E=8e-086) | PHD finger family protein

Coordinates

chrA06:+:20424920..20425855

Molecular Weight (calculated)

32085.8 Da

IEP (calculated)

8.201

GRAVY (calculated)

-0.392

Length

285 amino acids

Sequence
(BLAST)

001: MKRVKNCYST TAFHKEKTCS FKIVLNTDVS NQQQKKRRKT TMVGFDSSAP GEDKIEIRAR TWKSLNKVLQ VMEEKNKKCE KGLFLCDGCP SAFHYTCLGL
101: LSLPKEKLCF YPCCCCNVCG SIETSGNNKL MTCEQCQRRF HLKCLKQDPC LVSYRGWFCS RQCSRVTSAL QSLVGHKIEV GNEEDLVWTL MRAPNEDEHY
201: DNEQVSKLGS AVKILHQGFE PTKDPLSGRD LVEELIFKKD GVGVGRGLYT VMIEKNNEPI TVAAVRVEKN VAEISLVGEG GCVEC

Best Arabidopsis Sequence Match ( AT5G63900.1 )
(BLAST)

001: MNSCDIVPME AELSPGAIEE WLSTVKHGKM TENGKRRSDL SIKVKRHLSA LGWVISYYNK RNKKEQRYKS PKGKWFYSLA KACMSCVDQD SQQQLQIVPK
101: YDLSCLPSNI ASESSSDVSN QKQKKSKKRG RVEDLDVKST APEKDNHPSA DLIKIVPNFD VAKQQQQKKI IMNREGSDTA VFNGDQEKIR IGLNVDVIHE
201: QQKKRRKMAS EEIRRPKMVK SLKKVLQVME KKQQKNKHEK ESLRFCRKDC SPDMNCDVCC VCHWGGDLLL CDGCPSAFHH ACLGLSSLPE EDLWFCPCCC
301: CDICGSMESP ANSKLMACEQ CQRRFHLTCL KEDSCIVSSR GWFCSSQCNR VFSALENLLG SKIAVGNDGD LVWTLMRAPN EGEHYDDEQI SKLESAVEIL
401: HQGFEPTNDV FSGRDLVEEL IYRKDRTGVG RGFYTVLIER KNEPITVAAV RVDKDVVEIP LVATLSSYRR SGMCRVLMDE LEKQMSQMGV CRLVLPAAKE
501: VVTTWTERFG FSVMNSSERL ELVKHGMLDF VGTIMCHKFL QKERAENDSA EESSLTE

Arabidopsis Description

Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FMZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.