Factsheet for Bra012111.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01458	Canola	mitochondrion	99.2	99.2
AT5G66860.1	Thale cress	mitochondrion	82.73	82.73
Bra037144.1-P	Field mustard	cytosol	63.45	79.0
VIT_00s1247g00020.t01	Wine grape	mitochondrion	59.84	60.32
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	57.83	59.5
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	59.44	59.44
KRH57744	Soybean	mitochondrion	58.23	58.94
PGSC0003DMT400026094	Potato	mitochondrion, plastid	57.03	57.03
KRH04667	Soybean	mitochondrion	40.16	53.76
EER91230	Sorghum	mitochondrion	46.99	48.75
Zm00001d013730_P001	Maize	mitochondrion	46.59	48.54
HORVU4Hr1G013640.1	Barley	mitochondrion	44.98	47.26
TraesCS4B01G080000.1	Wheat	mitochondrion	44.98	47.26
TraesCS4A01G235000.1	Wheat	mitochondrion	44.58	46.84
TraesCS4D01G078900.1	Wheat	mitochondrion	44.58	46.84
Os03t0612600-01	Rice	mitochondrion, nucleus	30.12	42.86
Bra013716.1-P	Field mustard	mitochondrion	34.14	31.72
Bra010538.1-P	Field mustard	mitochondrion	33.73	31.0

Protein Annotations

Gene3D:2.170.120.20	MapMan:35.2	EnsemblPlantsGene:Bra012111	EnsemblPlants:Bra012111.1	EnsemblPlants:Bra012111.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121
UniProt:M4D6K2	PFAM:PF14693	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI000254176F	:	:

Description

AT5G66860 (E=2e-121) | INVOLVED IN: translation; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT4G23620.1); Has 2346 Blast hits to 2345 proteins in 433 species: Archae - 0; Bacteria - 930; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).

Coordinates

chrA07:+:9948112..9949441

Molecular Weight (calculated)

27397.4 Da

IEP (calculated)

10.210

GRAVY (calculated)

-0.143

Length

249 amino acids

Sequence
(BLAST)

001: MAIWWRGVRS AAEAANLPAA YSFGRSIRCL HQYETIQAIP REATGRRVSA RDRTIGRIPA VVFTQSLLET DASKRGVSRK QLLTADKKQI KSIVDSVGLP
101: FFCSTTFKLQ VRAGQGSSSL VESGRVLPLK IHRDEESGKI LNLVFVWAND GEQLKVDVPI VFKGLDDCPG LKKGGNLRSM RSTLKLLGPA EHIPSKIEVD
201: VSKLDIADKV LMQEVEFHPS LKLLSRNETL PVCKIVATSP VKEPEAVQA

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.