Factsheet for Zm00001d013730_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91230	Sorghum	mitochondrion	93.31	92.92
TraesCS4B01G080000.1	Wheat	mitochondrion	83.26	83.97
HORVU4Hr1G013640.1	Barley	mitochondrion	82.85	83.54
TraesCS4D01G078900.1	Wheat	mitochondrion	82.85	83.54
TraesCS4A01G235000.1	Wheat	mitochondrion	82.85	83.54
Os03t0612600-01	Rice	mitochondrion, nucleus	56.49	77.14
VIT_00s1247g00020.t01	Wine grape	mitochondrion	50.21	48.58
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	50.21	48.19
CDY01458	Canola	mitochondrion	49.37	47.39
CDY12782	Canola	mitochondrion	48.95	47.18
AT5G66860.1	Thale cress	mitochondrion	48.95	46.99
Bra012111.1-P	Field mustard	mitochondrion	48.54	46.59
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	46.86	46.28
KRH04667	Soybean	mitochondrion	35.98	46.24
CDY71642	Canola	mitochondrion	38.49	45.77
KRH57744	Soybean	mitochondrion	46.86	45.53
Bra037144.1-P	Field mustard	cytosol	38.08	45.5
PGSC0003DMT400026094	Potato	mitochondrion, plastid	46.44	44.58
CDX81361	Canola	mitochondrion	28.87	40.12
Zm00001d011263_P001	Maize	mitochondrion	33.05	30.62

Protein Annotations

EntrezGene:100283916	Gene3D:2.170.120.20	MapMan:35.2	UniProt:A0A1D6GLR4	ProteinID:AQK64252.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR037121	PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2
InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI000221F43C
EnsemblPlantsGene:Zm00001d013730	EnsemblPlants:Zm00001d013730_P001	EnsemblPlants:Zm00001d013730_T001	SEG:seg	:	:

Description

5S rRNA binding protein

Coordinates

chr5:+:18815334..18827255

Molecular Weight (calculated)

25886.7 Da

IEP (calculated)

10.670

GRAVY (calculated)

-0.165

Length

239 amino acids

Sequence
(BLAST)

001: MAQFLRGKAA AAAGAAVLRA SSPAPWRRTA SASYHHTIQA VPRETAGPRA AARERRHGRV PAVLLTLAGA APGNGIAHRH LLTADRRQLA EMLKQSPYFL
101: STPVRLQVRA GERSNAILHA GTVLPIKVHR DENSGNILNL VMVKADEGTM LKVDLPVEFK GKDACPGLKK GGFLQKIRTS LVYLCPAEHI PPKIEVDLTN
201: LDVGDRVLMH DIPVHPSLKL LSKNETMPVC KILASKPDE

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.