CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12782	Canola	mitochondrion	99.2	99.6
Bra012111.1-P	Field mustard	mitochondrion	99.2	99.2
AT5G66860.1	Thale cress	mitochondrion	82.73	82.73
CDY71642	Canola	mitochondrion	64.66	80.1
CDX81361	Canola	mitochondrion	46.18	66.86
VIT_00s1247g00020.t01	Wine grape	mitochondrion	60.64	61.13
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	58.63	60.33
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	60.24	60.24
KRH57744	Soybean	mitochondrion	58.23	58.94
PGSC0003DMT400026094	Potato	mitochondrion, plastid	57.83	57.83
KRH04667	Soybean	mitochondrion	40.56	54.3
EER91230	Sorghum	mitochondrion	47.79	49.58
Zm00001d013730_P001	Maize	mitochondrion	47.39	49.37
HORVU4Hr1G013640.1	Barley	mitochondrion	44.98	47.26
TraesCS4B01G080000.1	Wheat	mitochondrion	44.98	47.26
TraesCS4A01G235000.1	Wheat	mitochondrion	44.58	46.84
TraesCS4D01G078900.1	Wheat	mitochondrion	44.58	46.84
Os03t0612600-01	Rice	mitochondrion, nucleus	30.52	43.43
CDX98162	Canola	cytosol	20.08	36.23
CDY44122	Canola	mitochondrion	34.54	32.09
CDY57655	Canola	mitochondrion	34.14	31.72
CDY41665	Canola	mitochondrion	33.33	30.63
CDY24807	Canola	mitochondrion	32.93	30.26
CDY41659	Canola	plastid	10.84	24.55
CDY10889	Canola	cytosol	12.05	17.05

Protein Annotations

Gene3D:2.170.120.20	MapMan:35.2	GO:A0A078EPL4	EnsemblPlants:CDY01458	ProteinID:CDY01458	ProteinID:CDY01458.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008097	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00112464001	InterPro:IPR037121	PFAM:PF14693	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	InterPro:Ribosomal_L25
InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0004EE89CB	:

Description

BnaA07g12310D

Coordinates

chrLK031926:+:1159578..1161110

Molecular Weight (calculated)

27397.4 Da

IEP (calculated)

10.210

GRAVY (calculated)

-0.143

Length

249 amino acids

Sequence
(BLAST)

001: MAIWWRGVRS AAEAANLPAA YSFGRSIRCL HQYETIQAIP REATGRRVSA RDRTIGRIPA VVFTQSLLET DASKRGVSRK QLLTADRKQI KSIVDSVGLP
101: FFCSTTFKLQ VRAGQGSSSL VESGRVLPLK IHRDEESGKI LNLVFVWAND GEQLKVDVPI VFKGLDDCPG LKKGGNLRSM RSTLKLLGPA EHIPSKIEVD
201: VSKLDIADKV LMQEVEFHPS LKLLSKNETL PVCKIVATSP VKEPEAVQA

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.