Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 6
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
29145071
|
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026094 | Potato | mitochondrion, plastid | 97.52 | 94.78 |
| AT5G66860.1 | Thale cress | mitochondrion | 63.22 | 61.45 |
| KRH57744 | Soybean | mitochondrion | 61.98 | 60.98 |
| VIT_00s1247g00020.t01 | Wine grape | mitochondrion | 61.57 | 60.32 |
| VIT_07s0197g00010.t01 | Wine grape | mitochondrion, plastid | 61.57 | 59.84 |
| CDY12782 | Canola | mitochondrion | 60.33 | 58.87 |
| CDY01458 | Canola | mitochondrion | 60.33 | 58.63 |
| KRH04667 | Soybean | mitochondrion | 44.63 | 58.06 |
| Bra012111.1-P | Field mustard | mitochondrion | 59.5 | 57.83 |
| Bra037144.1-P | Field mustard | cytosol | 44.63 | 54.0 |
| CDY71642 | Canola | mitochondrion | 43.8 | 52.74 |
| CDX81361 | Canola | mitochondrion | 35.95 | 50.58 |
| Zm00001d013730_P001 | Maize | mitochondrion | 46.28 | 46.86 |
| HORVU4Hr1G013640.1 | Barley | mitochondrion | 44.63 | 45.57 |
| TraesCS4B01G080000.1 | Wheat | mitochondrion | 44.63 | 45.57 |
| TraesCS4D01G078900.1 | Wheat | mitochondrion | 44.63 | 45.57 |
| TraesCS4A01G235000.1 | Wheat | mitochondrion | 44.21 | 45.15 |
| EER91230 | Sorghum | mitochondrion | 44.63 | 45.0 |
| Os03t0612600-01 | Rice | mitochondrion, nucleus | 30.99 | 42.86 |
| Solyc11g018560.1.1 | Tomato | mitochondrion | 31.41 | 30.16 |
Protein Annotations
| Gene3D:2.170.120.20 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008097 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 |
| InterPro:IPR037121 | UniProt:K4BCJ1 | PFAM:PF14693 | PANTHER:PTHR33284 | PANTHER:PTHR33284:SF2 | InterPro:Ribosomal_L25 |
| InterPro:Ribosomal_L25/Gln-tRNA_synth | InterPro:Ribosomal_L25_C | InterPro:Ribosomal_L25_b-dom | SUPFAM:SSF50715 | EnsemblPlantsGene:Solyc02g090420.2 | EnsemblPlants:Solyc02g090420.2.1 |
| UniParc:UPI0002769243 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:51982656..51986092
Molecular Weight (calculated)
26883.5 Da
IEP (calculated)
9.989
GRAVY (calculated)
-0.251
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKWWRAVAT TAGGLRSTEV TSRRTYFTIQ AIPREVSGRR VSSRDRAQGR IPAVVFSQNY VQSKPDDPTS IVAASSVSRK FLLTTERKQI KTIIDSVDLP
101: FFCSTTFPLQ IRAGSGSSTL LESGKVLPIK IHKDEETGKI LNLVFVWAED GTKLRVDVPV VFKGEHECPG LKKGGYLNKI RPSLKLLCPA ENIPQKIEVD
201: ISQLDVEDKV SLHDIDVHPT WKLLSKNETI PVCKVKATPV DS
101: FFCSTTFPLQ IRAGSGSSTL LESGKVLPIK IHKDEETGKI LNLVFVWAED GTKLRVDVPV VFKGEHECPG LKKGGYLNKI RPSLKLLCPA ENIPQKIEVD
201: ISQLDVEDKV SLHDIDVHPT WKLLSKNETI PVCKVKATPV DS
001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA
Arabidopsis Description
Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.