Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 7
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
27780359
nucleus: 28499913 |
msms PMID:
27780359
doi
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04667 | Soybean | mitochondrion | 57.32 | 75.81 |
| VIT_07s0197g00010.t01 | Wine grape | mitochondrion, plastid | 66.26 | 65.46 |
| VIT_00s1247g00020.t01 | Wine grape | mitochondrion | 65.45 | 65.18 |
| Solyc02g090420.2.1 | Tomato | endoplasmic reticulum | 60.98 | 61.98 |
| AT5G66860.1 | Thale cress | mitochondrion | 62.2 | 61.45 |
| PGSC0003DMT400026094 | Potato | mitochondrion, plastid | 60.98 | 60.24 |
| CDY12782 | Canola | mitochondrion | 58.94 | 58.47 |
| Bra012111.1-P | Field mustard | mitochondrion | 58.94 | 58.23 |
| CDY01458 | Canola | mitochondrion | 58.94 | 58.23 |
| CDY71642 | Canola | mitochondrion | 44.31 | 54.23 |
| Bra037144.1-P | Field mustard | cytosol | 43.5 | 53.5 |
| CDX81361 | Canola | mitochondrion | 32.93 | 47.09 |
| EER91230 | Sorghum | mitochondrion | 45.94 | 47.08 |
| Zm00001d013730_P001 | Maize | mitochondrion | 45.53 | 46.86 |
| HORVU4Hr1G013640.1 | Barley | mitochondrion | 43.9 | 45.57 |
| TraesCS4B01G080000.1 | Wheat | mitochondrion | 43.9 | 45.57 |
| TraesCS4D01G078900.1 | Wheat | mitochondrion | 43.9 | 45.57 |
| TraesCS4A01G235000.1 | Wheat | mitochondrion | 43.5 | 45.15 |
| Os03t0612600-01 | Rice | mitochondrion, nucleus | 28.86 | 40.57 |
| KRG94894 | Soybean | mitochondrion | 34.96 | 33.46 |
| KRH06647 | Soybean | nucleus | 25.2 | 25.73 |
Protein Annotations
| EntrezGene:100802599 | Gene3D:2.170.120.20 | MapMan:35.2 | EMBL:ACUP02002889 | EnsemblPlantsGene:GLYMA_05G081300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008097 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0022625 | UniProt:I1K1R5 | InterPro:IPR037121 | EnsemblPlants:KRH57744 | ProteinID:KRH57744 | ProteinID:KRH57744.1 |
| PFAM:PF14693 | PANTHER:PTHR33284 | PANTHER:PTHR33284:SF2 | InterPro:Ribosomal_L25 | InterPro:Ribosomal_L25/Gln-tRNA_synth | InterPro:Ribosomal_L25_C |
| InterPro:Ribosomal_L25_b-dom | SUPFAM:SSF50715 | UniParc:UPI0002339F61 | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:12096919..12103130
Molecular Weight (calculated)
27161.0 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.198
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQWWRSAA GHLRTVAAGR GSLSGFQRST YHTIQAIPRE CSGSKVSARD RTQGRIPCVV FLQNLLEKNP DARSESKKHL LTVEKKQIKA ILDSADAPFF
101: CSTRFPLQIR AGSGSSHLLE SGTVLPIKIH RDEESGKILN LVFVWAEDGM KLKVDVPVVF EGEDACPGVQ KGGILNKIRP SLKFLCPSEH IPSKIVVDVS
201: NLDIEDRIFM RDIEVHPSLK LLSKNESMPI CKIVPTSLGN KEPIEA
101: CSTRFPLQIR AGSGSSHLLE SGTVLPIKIH RDEESGKILN LVFVWAEDGM KLKVDVPVVF EGEDACPGVQ KGGILNKIRP SLKFLCPSEH IPSKIVVDVS
201: NLDIEDRIFM RDIEVHPSLK LLSKNESMPI CKIVPTSLGN KEPIEA
001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA
Arabidopsis Description
Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.