Factsheet for PGSC0003DMT400026094

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	94.78	97.52
KRH57744	Soybean	mitochondrion	60.24	60.98
AT5G66860.1	Thale cress	mitochondrion	60.64	60.64
VIT_00s1247g00020.t01	Wine grape	mitochondrion	59.84	60.32
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	59.84	59.84
KRH04667	Soybean	mitochondrion	43.78	58.6
CDY12782	Canola	mitochondrion	57.83	58.06
CDY01458	Canola	mitochondrion	57.83	57.83
Bra012111.1-P	Field mustard	mitochondrion	57.03	57.03
Bra037144.1-P	Field mustard	cytosol	42.57	53.0
CDY71642	Canola	mitochondrion	41.77	51.74
CDX81361	Canola	mitochondrion	34.14	49.42
Zm00001d013730_P001	Maize	mitochondrion	44.58	46.44
HORVU4Hr1G013640.1	Barley	mitochondrion	42.97	45.15
TraesCS4B01G080000.1	Wheat	mitochondrion	42.97	45.15
TraesCS4D01G078900.1	Wheat	mitochondrion	42.97	45.15
TraesCS4A01G235000.1	Wheat	mitochondrion	42.57	44.73
EER91230	Sorghum	mitochondrion	42.97	44.58
Os03t0612600-01	Rice	mitochondrion, nucleus	30.12	42.86
PGSC0003DMT400040794	Potato	mitochondrion	30.12	32.47
PGSC0003DMT400002340	Potato	mitochondrion	30.52	30.28

Protein Annotations

EntrezGene:102591158	Gene3D:2.170.120.20	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121
UniProt:M1AMN3	PFAM:PF14693	EnsemblPlantsGene:PGSC0003DMG400010066	PGSC:PGSC0003DMG400010066	EnsemblPlants:PGSC0003DMT400026094	PANTHER:PTHR33284
PANTHER:PTHR33284:SF2	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715
UniParc:UPI0002956BF5	:	:	:	:	:

Description

50S ribosomal protein L25 [Source:PGSC_GENE;Acc:PGSC0003DMG400010066]

Coordinates

chr2:-:44328630..44331752

Molecular Weight (calculated)

27581.2 Da

IEP (calculated)

9.691

GRAVY (calculated)

-0.251

Length

249 amino acids

Sequence
(BLAST)

001: MSKWWRAVAT TAGGLRSMEV TSRRSYFTIQ AIPREVSGRR VSSRDRAQGR IPAVVFSQNY VQSKPEDPTS IVASSSVSRK FLLTTERKQI KTIIDSVDLP
101: FFCSTTFPLQ IRAGSGSSTL LESGKVLPIK ASDPSSCIHK DEETGKILNL VFVWAEDGTK LRVDVPVVFK GEHECPGLKK GGYLNKIRPS LKFLCPAENI
201: PQKIEVDISQ LDVEDKVSLH DIDVHPTWKL LSKNEAIPVC KVKATPVDS

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.