Factsheet for VIT_07s0197g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1247g00020.t01	Wine grape	mitochondrion	96.39	97.17
KRH57744	Soybean	mitochondrion	65.46	66.26
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	59.84	61.57
CDY12782	Canola	mitochondrion	60.24	60.48
AT5G66860.1	Thale cress	mitochondrion	60.24	60.24
CDY01458	Canola	mitochondrion	60.24	60.24
PGSC0003DMT400026094	Potato	mitochondrion, plastid	59.84	59.84
Bra012111.1-P	Field mustard	mitochondrion	59.44	59.44
KRH04667	Soybean	mitochondrion	44.18	59.14
CDY71642	Canola	mitochondrion	45.38	56.22
Bra037144.1-P	Field mustard	cytosol	44.58	55.5
Zm00001d013730_P001	Maize	mitochondrion	48.19	50.21
EER91230	Sorghum	mitochondrion	48.19	50.0
HORVU4Hr1G013640.1	Barley	mitochondrion	46.99	49.37
TraesCS4B01G080000.1	Wheat	mitochondrion	46.99	49.37
TraesCS4D01G078900.1	Wheat	mitochondrion	46.99	49.37
TraesCS4A01G235000.1	Wheat	mitochondrion	46.59	48.95
CDX81361	Canola	mitochondrion	33.73	48.84
Os03t0612600-01	Rice	mitochondrion, nucleus	32.53	46.29
VIT_02s0025g00620.t01	Wine grape	mitochondrion	36.55	35.27
VIT_04s0023g00850.t01	Wine grape	mitochondrion	36.55	35.27

Protein Annotations

EntrezGene:100251177	wikigene:100251177	Gene3D:2.170.120.20	MapMan:35.2	ProteinID:CBI23278	ProteinID:CBI23278.3
UniProt:E0CVU5	EMBL:FN595251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR037121	EntrezGene:LOC100251177
wikigene:LOC100251177	PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	InterPro:Ribosomal_L25
InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	TIGR:TC62420	UniParc:UPI0001BE2294
ArrayExpress:VIT_07s0197g00010	EnsemblPlantsGene:VIT_07s0197g00010	EnsemblPlants:VIT_07s0197g00010.t01	unigene:Vvi.15335	RefSeq:XP_002263685	RefSeq:XP_002263685.2
RefSeq:XP_003635532	RefSeq:XP_003635532.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:14498937..14502525

Molecular Weight (calculated)

27165.0 Da

IEP (calculated)

10.086

GRAVY (calculated)

-0.111

Length

249 amino acids

Sequence
(BLAST)

001: MSRWWGAAAG RLRTAVSNPR SLYLSSSPPA AAYHTIQAIS REFTGSKVSA RDRAQGRIPA VVFAQQLLTG GNINGRSVSR KRLLTTERKQ IQAILKSVEP
101: EFICSTTFPL QIRAGSGSSV LLESGTVLPL KIHRDEATGK VLNLVFAWAD EGSELKVDVP LVFKGEDVCP GLKKGGYLNR IRPSLKFLCP AEHIPSKIEV
201: DVSNLDIGDR ILMHDVEVHP SLKLLSKNET MPVCKIVAAK LERAESGEV

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.