CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71642	Canola	mitochondrion	62.79	53.73
CDY12782	Canola	mitochondrion	67.44	46.77
CDY01458	Canola	mitochondrion	66.86	46.18
AT5G66860.1	Thale cress	mitochondrion	64.53	44.58
KRH04667	Soybean	mitochondrion	40.12	37.1
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	50.58	35.95
VIT_00s1247g00020.t01	Wine grape	mitochondrion	49.42	34.41
PGSC0003DMT400026094	Potato	mitochondrion, plastid	49.42	34.14
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	48.84	33.73
KRH57744	Soybean	mitochondrion	47.09	32.93
TraesCS4D01G078900.1	Wheat	mitochondrion	41.28	29.96
TraesCS4B01G080000.1	Wheat	mitochondrion	41.28	29.96
HORVU4Hr1G013640.1	Barley	mitochondrion	41.28	29.96
TraesCS4A01G235000.1	Wheat	mitochondrion	40.7	29.54
CDX98162	Canola	cytosol	23.26	28.99
Zm00001d013730_P001	Maize	mitochondrion	40.12	28.87
EER91230	Sorghum	mitochondrion	40.12	28.75
CDY41659	Canola	plastid	13.37	20.91
CDY57655	Canola	mitochondrion	30.81	19.78
CDY44122	Canola	mitochondrion	30.81	19.78
Os03t0612600-01	Rice	mitochondrion, nucleus	18.6	18.29
CDY24807	Canola	mitochondrion	28.49	18.08
CDY41665	Canola	mitochondrion	27.91	17.71
CDY10889	Canola	cytosol	15.12	14.77

Protein Annotations

EnsemblPlants:CDX81361	EnsemblPlantsGene:GSBRNA2T00134917001	Gene3D:2.170.120.20	GO:A0A078CW64	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	PFAM:PF14693	ProteinID:CDX81361
ProteinID:CDX81361.1	SUPFAM:SSF50715	UniParc:UPI0004EDED74	MapMan:35.2	:	:

Description

BnaC09g07720D

Coordinates

chrLK031824:+:1200093..1201247

Molecular Weight (calculated)

18802.3 Da

IEP (calculated)

8.380

GRAVY (calculated)

0.158

Length

172 amino acids

Sequence
(BLAST)

001: MAKWWRGLRS VAEVADLPAS SFVRSIRCVS MKQIKWIIDS VVESGQVLPL KVADEESGKV LNLVDVPLVF KGLDNCPGIK KAGGNLRSMR SSLKLVGPAE
101: HIPSKIEVDV SQLDIEDKVL LQEVVFHPSL KLLSKNETLP VCKIAATSPV KEQESCSSIS KVLEKVICCP IL

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.