CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24807	Canola	mitochondrion	97.79	97.79
CDY44122	Canola	mitochondrion	90.04	91.04
CDY57655	Canola	mitochondrion	89.3	90.3
CDX98162	Canola	cytosol	45.39	89.13
AT4G23620.2	Thale cress	mitochondrion	84.5	82.67
VIT_04s0023g00850.t01	Wine grape	mitochondrion	66.42	69.77
VIT_02s0025g00620.t01	Wine grape	mitochondrion	66.42	69.77
PGSC0003DMT400040794	Potato	mitochondrion	58.67	68.83
KRG94894	Soybean	mitochondrion	64.94	68.48
PGSC0003DMT400002340	Potato	mitochondrion	62.73	67.73
Solyc11g018560.1.1	Tomato	mitochondrion	62.36	67.06
GSMUA_Achr2P08360_001	Banana	mitochondrion	62.73	64.89
CDY41659	Canola	plastid	26.2	64.55
EES03203	Sorghum	mitochondrion	60.89	62.5
Zm00001d011263_P001	Maize	mitochondrion	59.41	62.4
TraesCS3D01G215300.1	Wheat	mitochondrion	60.89	62.26
TraesCS3B01G243200.1	Wheat	mitochondrion	60.52	61.89
TraesCS3A01G212900.1	Wheat	mitochondrion	60.89	61.8
Os05t0270000-01	Rice	mitochondrion	59.78	61.13
Os01t0593500-00	Rice	mitochondrion	60.52	60.52
HORVU3Hr1G051530.1	Barley	plastid	61.25	55.15
KRH06647	Soybean	nucleus	48.71	54.77
CDY10889	Canola	cytosol	23.25	35.8
CDY12782	Canola	mitochondrion	30.63	33.47
CDY01458	Canola	mitochondrion	30.63	33.33
CDY71642	Canola	mitochondrion	22.88	30.85
CDX81361	Canola	mitochondrion	17.71	27.91

Protein Annotations

Gene3D:2.170.120.20	MapMan:35.2	GO:A0A078HT01	UniProt:A0A078HT01	EnsemblPlants:CDY41665	ProteinID:CDY41665
ProteinID:CDY41665.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00073339001	InterPro:IPR037121	PFAM:PD012503	PFAM:PF01386	PFAM:PF14693
PANTHER:PTHR33284	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715
UniParc:UPI0004EDE6A6	SEG:seg	:	:	:	:

Description

BnaC03g62190DBnaC03g62190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT01]

Coordinates

chrLK032502:-:265761..267522

Molecular Weight (calculated)

29855.4 Da

IEP (calculated)

10.456

GRAVY (calculated)

-0.300

Length

271 amino acids

Sequence
(BLAST)

001: MLLRRATALP KTLQNLRLFS PAATSALALE HALETQLDYL PGFPRPDAKH AETILAVPRS DSGKNISAKE RKAGRVPSII FEQENGQHGG NKRLVSVQTN
101: QIRKLVTHLG YSFFLSRLFD VEVRSEIGSD EVIEKVRALP RSIHLHSGTD APLNVTFIRA PPGTLLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIVPPYIE VDLSLLDVGQ KLVAGDLKVH PALKLIRPKD EPIVKIAGGR VSDQQKDQQK KDQPKKEQSK K

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.