CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41659	Canola	plastid	44.93	56.36
CDY57655	Canola	mitochondrion	94.93	48.88
CDY44122	Canola	mitochondrion	94.2	48.51
CDY24807	Canola	mitochondrion	89.86	45.76
CDY41665	Canola	mitochondrion	89.13	45.39
AT4G23620.2	Thale cress	mitochondrion	78.99	39.35
KRG94894	Soybean	mitochondrion	70.29	37.74
VIT_04s0023g00850.t01	Wine grape	mitochondrion	68.84	36.82
VIT_02s0025g00620.t01	Wine grape	mitochondrion	68.84	36.82
PGSC0003DMT400040794	Potato	mitochondrion	60.87	36.36
PGSC0003DMT400002340	Potato	mitochondrion	63.04	34.66
Solyc11g018560.1.1	Tomato	mitochondrion	63.04	34.52
CDY10889	Canola	cytosol	41.3	32.39
GSMUA_Achr2P08360_001	Banana	mitochondrion	59.42	31.3
TraesCS3A01G212900.1	Wheat	mitochondrion	60.14	31.09
TraesCS3D01G215300.1	Wheat	mitochondrion	59.42	30.94
TraesCS3B01G243200.1	Wheat	mitochondrion	59.42	30.94
EES03203	Sorghum	mitochondrion	58.7	30.68
Os05t0270000-01	Rice	mitochondrion	58.7	30.57
Zm00001d011263_P001	Maize	mitochondrion	55.8	29.84
Os01t0593500-00	Rice	mitochondrion	57.97	29.52
HORVU3Hr1G051530.1	Barley	plastid	60.14	27.57
CDX81361	Canola	mitochondrion	28.99	23.26
CDY71642	Canola	mitochondrion	30.43	20.9
CDY12782	Canola	mitochondrion	36.23	20.16
CDY01458	Canola	mitochondrion	36.23	20.08
KRH06647	Soybean	nucleus	32.61	18.67

Protein Annotations

EnsemblPlants:CDX98162	EnsemblPlantsGene:GSBRNA2T00105573001	Gene3D:2.170.120.20	GO:A0A078EAZ6	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	PANTHER:PTHR33284	PFAM:PF14693	ProteinID:CDX98162	ProteinID:CDX98162.1
SEG:seg	SUPFAM:SSF50715	UniParc:UPI0004EE9BC8	MapMan:35.2	:	:

Description

BnaC07g09360D

Coordinates

chrLK031903:+:176234..177036

Molecular Weight (calculated)

15084.6 Da

IEP (calculated)

10.027

GRAVY (calculated)

-0.214

Length

138 amino acids

Sequence
(BLAST)

001: MSALEIFFQI HLHSGTDAPL NVTFIRAPPG TLLKVDIPLV FIGDDVSPGL KKGASLNTIK RTVKFLCPAE IIPPYIEVDL SHLDVGQKLV TGDLKVHPAL
101: KLIKSKDEPV VKIAGGRVSD QQKDQGKKDQ PKKDQTKK

Best Arabidopsis Sequence Match ( AT4G23620.2 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAVKSPFLSL MKLIKIHLHS GTDAPLNVTF IRAPPGALLK VDIPLVFIGD DVSPGLKKGA
201: SLNTIKRTVK FLCPAEIIPP YIEVDLSQLD IGQKLVMGDL KVHPALKLIK SKDEPIVKVA GGRVTDTQKK SSDTQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.