Factsheet for PGSC0003DMT400002340

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g018560.1.1	Tomato	mitochondrion	96.02	95.63
PGSC0003DMT400040794	Potato	mitochondrion	83.67	90.91
VIT_02s0025g00620.t01	Wine grape	mitochondrion	72.51	70.54
VIT_04s0023g00850.t01	Wine grape	mitochondrion	71.71	69.77
KRG94894	Soybean	mitochondrion	68.13	66.54
CDY57655	Canola	mitochondrion	68.53	64.18
Bra013716.1-P	Field mustard	mitochondrion	67.73	63.43
CDY44122	Canola	mitochondrion	67.73	63.43
Bra010538.1-P	Field mustard	mitochondrion	68.13	63.1
CDY24807	Canola	mitochondrion	68.13	63.1
CDX98162	Canola	cytosol	34.66	63.04
GSMUA_Achr2P08360_001	Banana	mitochondrion	65.74	62.98
CDY41665	Canola	mitochondrion	67.73	62.73
AT4G23620.2	Thale cress	mitochondrion	68.92	62.45
TraesCS3D01G215300.1	Wheat	mitochondrion	64.14	60.75
TraesCS3B01G243200.1	Wheat	mitochondrion	63.74	60.38
TraesCS3A01G212900.1	Wheat	mitochondrion	64.14	60.3
EES03203	Sorghum	mitochondrion	63.35	60.23
Zm00001d011263_P001	Maize	mitochondrion	61.35	59.69
Os05t0270000-01	Rice	mitochondrion	62.15	58.87
Os01t0593500-00	Rice	mitochondrion	62.55	57.93
KRH06647	Soybean	nucleus	51.0	53.11
HORVU3Hr1G051530.1	Barley	plastid	63.35	52.82
CDY41659	Canola	plastid	19.92	45.45
CDY10889	Canola	cytosol	23.51	33.52
PGSC0003DMT400026094	Potato	mitochondrion, plastid	30.28	30.52

Protein Annotations

EntrezGene:102596008	Gene3D:2.170.120.20	Gene3D:2.40.240.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR020056	InterPro:IPR037121
UniProt:M0ZJY8	PFAM:PD012503	PFAM:PF01386	PFAM:PF14693	EnsemblPlantsGene:PGSC0003DMG400000893	PGSC:PGSC0003DMG400000893
EnsemblPlants:PGSC0003DMT400002340	PANTHER:PTHR33284	InterPro:Rbsml_L25/Gln-tRNA_synth_N	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C
InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0002966688	RefSeq:XP_006351909.1	SEG:seg	:

Description

Ribosomal protein L25 [Source:PGSC_GENE;Acc:PGSC0003DMG400000893]

Coordinates

chr11:+:11132319..11138526

Molecular Weight (calculated)

27975.2 Da

IEP (calculated)

10.346

GRAVY (calculated)

-0.176

Length

251 amino acids

Sequence
(BLAST)

001: MLIRRIVLTK SLHHFRLLSN YATAAAAVVP DVDYDFPKPD PKYAETIHAV VRVTSGKNIA AKERKAGRVP SIVFEQEDGQ HGGNKRLISV QANQIRKLVN
101: HLGRSQFLSR LFDLEIHPDL ESQDVIEKVR VLPRKVHLEA GSDAPLNVTF IRAPSSALLK VEVPLVFRGE DVSPGLKKGS YLNIIKRTVK FICPADLIPP
201: YIDVDLSELD VNQKLLMGDL RVHPALKLIQ SKDHPVVKIA GARVSDQKKS K

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.