Factsheet for Bra010538.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24807	Canola	mitochondrion	99.63	99.63
Bra013716.1-P	Field mustard	mitochondrion	90.04	91.04
AT4G23620.2	Thale cress	mitochondrion	84.87	83.03
VIT_04s0023g00850.t01	Wine grape	mitochondrion	67.16	70.54
VIT_02s0025g00620.t01	Wine grape	mitochondrion	67.16	70.54
PGSC0003DMT400040794	Potato	mitochondrion	59.04	69.26
KRG94894	Soybean	mitochondrion	65.31	68.87
PGSC0003DMT400002340	Potato	mitochondrion	63.1	68.13
Solyc11g018560.1.1	Tomato	mitochondrion	62.73	67.46
GSMUA_Achr2P08360_001	Banana	mitochondrion	61.62	63.74
TraesCS3D01G215300.1	Wheat	mitochondrion	60.15	61.51
EES03203	Sorghum	mitochondrion	59.78	61.36
Zm00001d011263_P001	Maize	mitochondrion	58.3	61.24
TraesCS3B01G243200.1	Wheat	mitochondrion	59.78	61.13
TraesCS3A01G212900.1	Wheat	mitochondrion	60.15	61.05
Os05t0270000-01	Rice	mitochondrion	58.67	60.0
Os01t0593500-00	Rice	mitochondrion	59.41	59.41
KRH06647	Soybean	nucleus	48.71	54.77
HORVU3Hr1G051530.1	Barley	plastid	60.52	54.49
Bra012111.1-P	Field mustard	mitochondrion	31.0	33.73
Bra037144.1-P	Field mustard	cytosol	22.51	30.5

Protein Annotations

Gene3D:2.170.120.20	MapMan:35.2	EnsemblPlantsGene:Bra010538	EnsemblPlants:Bra010538.1	EnsemblPlants:Bra010538.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121
UniProt:M4D238	PFAM:PD012503	PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	InterPro:Ribosomal_L25
InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0002545E36	SEG:seg

Description

AT4G23620 (E=3e-127) | 50S ribosomal protein-related

Coordinates

chrA08:-:15042294..15043827

Molecular Weight (calculated)

29826.4 Da

IEP (calculated)

10.384

GRAVY (calculated)

-0.289

Length

271 amino acids

Sequence
(BLAST)

001: MLLRRATALP KTLQNLRLFS PAATSALALD HALESQLDYL PGFPRPDAKH AETILAVPRS DSGKNISAKE RKAGRVPSII FEQEDGQHGG NKRLVSVQTN
101: QIRKLVTHLG YSFFLARLFD VEVRSEIGSD EVIEKVRALP RSIHLHSGTD APLNVTFIRA PPGTLLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSLLDVGQ KLVAGDLKVH PALKLIRPKD EPIVKIAGGR VSDQQKDQQK KDQPKKEQSK K

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.