Factsheet for Zm00001d011263_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03203	Sorghum	mitochondrion	89.92	87.88
TraesCS3D01G215300.1	Wheat	mitochondrion	84.88	82.64
TraesCS3B01G243200.1	Wheat	mitochondrion	84.88	82.64
Os05t0270000-01	Rice	mitochondrion	84.11	81.89
TraesCS3A01G212900.1	Wheat	mitochondrion	84.11	81.27
Os01t0593500-00	Rice	mitochondrion	81.78	77.86
HORVU3Hr1G051530.1	Barley	plastid	84.11	72.09
GSMUA_Achr2P08360_001	Banana	mitochondrion	67.05	66.03
PGSC0003DMT400040794	Potato	mitochondrion	57.36	64.07
KRG94894	Soybean	mitochondrion	63.18	63.42
VIT_04s0023g00850.t01	Wine grape	mitochondrion	63.18	63.18
VIT_02s0025g00620.t01	Wine grape	mitochondrion	63.18	63.18
PGSC0003DMT400002340	Potato	mitochondrion	59.69	61.35
Solyc11g018560.1.1	Tomato	mitochondrion	58.91	60.32
CDY41665	Canola	mitochondrion	62.4	59.41
Bra010538.1-P	Field mustard	mitochondrion	61.24	58.3
CDY24807	Canola	mitochondrion	60.85	57.93
AT4G23620.2	Thale cress	mitochondrion	61.24	57.04
CDY44122	Canola	mitochondrion	58.91	56.72
Bra013716.1-P	Field mustard	mitochondrion	58.91	56.72
CDY57655	Canola	mitochondrion	58.53	56.34
CDX98162	Canola	cytosol	29.84	55.8
KRH06647	Soybean	nucleus	46.9	50.21
CDY41659	Canola	plastid	16.28	38.18
Zm00001d013730_P001	Maize	mitochondrion	30.62	33.05
CDY10889	Canola	cytosol	18.99	27.84

Protein Annotations

EntrezGene:100274018	Gene3D:2.170.120.20	Gene3D:2.40.240.10	MapMan:35.2	ProteinID:AQK96376.1	UniProt:B4FYM2
EMBL:BT042210	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824
GO:GO:0004812	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0050897	InterPro:IPR020056
InterPro:IPR037121	PFAM:PD012503	PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	InterPro:Rbsml_L25/Gln-tRNA_synth_N
InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI00017B7EEE
EnsemblPlantsGene:Zm00001d011263	EnsemblPlants:Zm00001d011263_P001	EnsemblPlants:Zm00001d011263_T001	SEG:seg	:	:

Description

Ribosomal protein L25/Gln-tRNA synthetase anti-codon-binding domain

Coordinates

chr8:-:144951798..144954935

Molecular Weight (calculated)

28733.9 Da

IEP (calculated)

10.007

GRAVY (calculated)

-0.250

Length

258 amino acids

Sequence
(BLAST)

001: MLIRRPLQTL TLPLLRRHFS AATVEAFVSP DQATDPLSPP YDYLPGHPRP DAKHNEVILA VPRASSGRHV AAKERKAGRV PAIVFEQENG QEGGNKRLIS
101: VRANQIRKLV DHLGRSFFLS RLFSLQVWSE HAGQGELIES VRVLPRKVHL HAGTDEPLNI TFMRAPSSAL LKIDVPLMFI GEDASPGLRK GAYFNTIKRT
201: AKYLCPADIV PPYIEVDLSE LDVGQKLLMR DLKVHPALKL LHSPDQPICN FTGSRSPE

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.