CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44122	Canola	mitochondrion	98.13	98.13
CDX98162	Canola	cytosol	48.88	94.93
CDY41665	Canola	mitochondrion	90.3	89.3
CDY24807	Canola	mitochondrion	89.93	88.93
AT4G23620.2	Thale cress	mitochondrion	81.72	79.06
VIT_02s0025g00620.t01	Wine grape	mitochondrion	67.91	70.54
VIT_04s0023g00850.t01	Wine grape	mitochondrion	66.42	68.99
PGSC0003DMT400002340	Potato	mitochondrion	64.18	68.53
KRG94894	Soybean	mitochondrion	65.3	68.09
PGSC0003DMT400040794	Potato	mitochondrion	58.58	67.97
Solyc11g018560.1.1	Tomato	mitochondrion	63.81	67.86
GSMUA_Achr2P08360_001	Banana	mitochondrion	62.69	64.12
CDY41659	Canola	plastid	24.25	59.09
EES03203	Sorghum	mitochondrion	58.21	59.09
Zm00001d011263_P001	Maize	mitochondrion	56.34	58.53
Os05t0270000-01	Rice	mitochondrion	57.46	58.11
TraesCS3D01G215300.1	Wheat	mitochondrion	57.46	58.11
TraesCS3A01G212900.1	Wheat	mitochondrion	57.84	58.05
TraesCS3B01G243200.1	Wheat	mitochondrion	57.09	57.74
Os01t0593500-00	Rice	mitochondrion	57.84	57.2
KRH06647	Soybean	nucleus	47.76	53.11
HORVU3Hr1G051530.1	Barley	plastid	57.84	51.49
CDY10889	Canola	cytosol	25.75	39.2
CDY12782	Canola	mitochondrion	32.09	34.68
CDY01458	Canola	mitochondrion	31.72	34.14
CDY71642	Canola	mitochondrion	24.25	32.34
CDX81361	Canola	mitochondrion	19.78	30.81

Protein Annotations

Gene3D:2.170.120.20	Gene3D:2.40.240.10	MapMan:35.2	GO:A0A078J2J3	UniProt:A0A078J2J3	EnsemblPlants:CDY57655
ProteinID:CDY57655	ProteinID:CDY57655.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00022463001	InterPro:IPR020056	InterPro:IPR037121	PFAM:PD012503
PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	InterPro:Rbsml_L25/Gln-tRNA_synth_N	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0004EBC70B	SEG:seg	:

Description

BnaC01g15340DBnaC01g15340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2J3]

Coordinates

chrLK033593:-:24810..26141

Molecular Weight (calculated)

29493.9 Da

IEP (calculated)

10.389

GRAVY (calculated)

-0.360

Length

268 amino acids

Sequence
(BLAST)

001: MLLRRATAAL PKTLQNLRLY SPAATSALPL ETQLDYLPGF PRPDPKHAET ILAVPRSDSG KNISAKERKA GRVPSIIFEQ EDGQHGGNKR LVSVQTNQIR
101: KLVTHMGYSF FLSRIFDVEV RSELESGEVV EKVRALPRSI HLHSGSDAPL NVTFIRAPPG TLLKVDIPLV FIGDDVSPGL KKGASLNTIK RTVKFLCPAE
201: IIPPYIEVDL SHLDVGQKLV TGDLKVHPAL KLIKSKDEPV VKIAGGRVSD QQKDQGKKDQ PKKDQTKK

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.