CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98162	Canola	cytosol	56.36	44.93
CDY10889	Canola	cytosol	45.45	28.41
CDY24807	Canola	mitochondrion	65.45	26.57
CDY41665	Canola	mitochondrion	64.55	26.2
CDY44122	Canola	mitochondrion	59.09	24.25
CDY57655	Canola	mitochondrion	59.09	24.25
AT4G23620.2	Thale cress	mitochondrion	57.27	22.74
KRG94894	Soybean	mitochondrion	50.0	21.4
VIT_04s0023g00850.t01	Wine grape	mitochondrion	50.0	21.32
VIT_02s0025g00620.t01	Wine grape	mitochondrion	50.0	21.32
PGSC0003DMT400040794	Potato	mitochondrion	44.55	21.21
Solyc11g018560.1.1	Tomato	mitochondrion	47.27	20.63
PGSC0003DMT400002340	Potato	mitochondrion	45.45	19.92
TraesCS3D01G215300.1	Wheat	mitochondrion	43.64	18.11
TraesCS3B01G243200.1	Wheat	mitochondrion	43.64	18.11
TraesCS3A01G212900.1	Wheat	mitochondrion	43.64	17.98
GSMUA_Achr2P08360_001	Banana	mitochondrion	40.91	17.18
EES03203	Sorghum	mitochondrion	40.91	17.05
Os01t0593500-00	Rice	mitochondrion	41.82	16.97
Os05t0270000-01	Rice	mitochondrion	40.0	16.6
Zm00001d011263_P001	Maize	mitochondrion	38.18	16.28
HORVU3Hr1G051530.1	Barley	plastid	43.64	15.95
CDX81361	Canola	mitochondrion	20.91	13.37
CDY71642	Canola	mitochondrion	20.0	10.95
CDY12782	Canola	mitochondrion	24.55	10.89
CDY01458	Canola	mitochondrion	24.55	10.84
KRH06647	Soybean	nucleus	10.91	4.98

Protein Annotations

Gene3D:2.170.120.20	MapMan:35.2	GO:A0A078HW82	UniProt:A0A078HW82	EnsemblPlants:CDY41659	ProteinID:CDY41659
ProteinID:CDY41659.1	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00073327001	InterPro:IPR037121	PFAM:PF14693	PANTHER:PTHR33284	PANTHER:PTHR33284:SF1
InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0004EEDA7C	SEG:seg

Description

BnaC03g62250DBnaC03g62250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW82]

Coordinates

chrLK032502:-:222416..223243

Molecular Weight (calculated)

12046.6 Da

IEP (calculated)

10.573

GRAVY (calculated)

-0.337

Length

110 amino acids

Sequence
(BLAST)

001: MVFTTQHTSA SATTSSTTSG QTSYINSLGT SLNTIKRTVK FLFPAEIIPP YIEVNLSLLD VGQKLVAGDL KVHLALRLIR PKDEPIVKIA GGRVSDQQKK
101: DQPKKDQPKK

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.