CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g00850.t01	Wine grape	mitochondrion	76.26	75.97
VIT_02s0025g00620.t01	Wine grape	mitochondrion	76.26	75.97
KRH06647	Soybean	nucleus	71.21	75.93
CDX98162	Canola	cytosol	37.74	70.29
PGSC0003DMT400040794	Potato	mitochondrion	63.03	70.13
Solyc11g018560.1.1	Tomato	mitochondrion	67.32	68.65
PGSC0003DMT400002340	Potato	mitochondrion	66.54	68.13
AT4G23620.2	Thale cress	mitochondrion	71.21	66.06
Bra013716.1-P	Field mustard	mitochondrion	68.48	65.67
CDY44122	Canola	mitochondrion	68.48	65.67
Bra010538.1-P	Field mustard	mitochondrion	68.87	65.31
CDY57655	Canola	mitochondrion	68.09	65.3
GSMUA_Achr2P08360_001	Banana	mitochondrion	66.54	65.27
CDY24807	Canola	mitochondrion	68.48	64.94
CDY41665	Canola	mitochondrion	68.48	64.94
Zm00001d011263_P001	Maize	mitochondrion	63.42	63.18
TraesCS3B01G243200.1	Wheat	mitochondrion	64.98	63.02
TraesCS3D01G215300.1	Wheat	mitochondrion	64.98	63.02
EES03203	Sorghum	mitochondrion	64.2	62.5
TraesCS3A01G212900.1	Wheat	mitochondrion	64.59	62.17
Os05t0270000-01	Rice	mitochondrion	63.03	61.13
Os01t0593500-00	Rice	mitochondrion	63.42	60.15
HORVU3Hr1G051530.1	Barley	plastid	64.59	55.15
CDY41659	Canola	plastid	21.4	50.0
KRH57744	Soybean	mitochondrion	33.46	34.96
CDY10889	Canola	cytosol	23.35	34.09
KRH04667	Soybean	mitochondrion	24.51	33.87

Protein Annotations

EntrezGene:100809143	Gene3D:2.170.120.20	MapMan:35.2	EMBL:ACUP02012053	EnsemblPlantsGene:GLYMA_19G116200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008097	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	UniProt:I1N8C9	InterPro:IPR037121	EnsemblPlants:KRG94894	ProteinID:KRG94894	ProteinID:KRG94894.1
PFAM:PD012503	PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI000233E311	:	:

Description

hypothetical protein

Coordinates

chr19:+:37158455..37161906

Molecular Weight (calculated)

28897.2 Da

IEP (calculated)

10.517

GRAVY (calculated)

-0.339

Length

257 amino acids

Sequence
(BLAST)

001: MYLPRHHILT RLSPYRRHFS HSAAAVLRPP GPEPLTYLDG FPRPDPKHDE TILAIPRADS GKNISAKERR AGRLPSIVFE QEDGQHGGNK RLISVRTDQI
101: RKLVNHLGRS FFLSRLFHLQ VRAHFDSEDD FVETVRVLPR AIHLKAGTDA PLNVTFIRAP SNALLKVDVP LVFRGEDVSP GLKKGASLNT IKRTVKYLCP
201: ADIIPPYIDV DLSELDVGQK LVMGDLKVHP ALKLLQSRDE AVVKIMGQRV SELQKKK

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.