Factsheet for Solyc11g018560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002340	Potato	mitochondrion	95.63	96.02
VIT_02s0025g00620.t01	Wine grape	mitochondrion	71.43	69.77
VIT_04s0023g00850.t01	Wine grape	mitochondrion	70.24	68.6
KRG94894	Soybean	mitochondrion	68.65	67.32
CDY57655	Canola	mitochondrion	67.86	63.81
CDY44122	Canola	mitochondrion	67.06	63.06
Bra013716.1-P	Field mustard	mitochondrion	67.06	63.06
CDX98162	Canola	cytosol	34.52	63.04
CDY24807	Canola	mitochondrion	67.46	62.73
Bra010538.1-P	Field mustard	mitochondrion	67.46	62.73
GSMUA_Achr2P08360_001	Banana	mitochondrion	65.08	62.6
CDY41665	Canola	mitochondrion	67.06	62.36
AT4G23620.2	Thale cress	mitochondrion	67.46	61.37
TraesCS3D01G215300.1	Wheat	mitochondrion	63.49	60.38
TraesCS3B01G243200.1	Wheat	mitochondrion	63.1	60.0
TraesCS3A01G212900.1	Wheat	mitochondrion	63.49	59.93
EES03203	Sorghum	mitochondrion	62.3	59.47
Zm00001d011263_P001	Maize	mitochondrion	60.32	58.91
Os05t0270000-01	Rice	mitochondrion	61.11	58.11
Os01t0593500-00	Rice	mitochondrion	61.9	57.56
KRH06647	Soybean	nucleus	51.59	53.94
HORVU3Hr1G051530.1	Barley	plastid	62.7	52.49
CDY41659	Canola	plastid	20.63	47.27
CDY10889	Canola	cytosol	23.41	33.52
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	30.16	31.41

Protein Annotations

Gene3D:2.170.120.20	Gene3D:2.40.240.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
GO:GO:0050897	InterPro:IPR020056	InterPro:IPR037121	UniProt:K4D6R0	PFAM:PD012503	PFAM:PF01386
PFAM:PF14693	PANTHER:PTHR33284	InterPro:Rbsml_L25/Gln-tRNA_synth_N	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C
InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	EnsemblPlantsGene:Solyc11g018560.1	EnsemblPlants:Solyc11g018560.1.1	UniParc:UPI000276AA66	SEG:seg

Description

No Description!

Coordinates

chr11:+:8721428..8726834

Molecular Weight (calculated)

28037.3 Da

IEP (calculated)

10.474

GRAVY (calculated)

-0.198

Length

252 amino acids

Sequence
(BLAST)

001: MLIRRIVLTK SLHHFRFLSN YATASAAAVV PDVDDDFPKP NPKYAETIHA VVRVTSGKNI AAKERKAGRV PSIVFEQEDG QHGGNKRLIS VQANQIRKLV
101: NHLGRSHFLS RLFDLEVHPN LESQDVVEKV RVLPRKVHLE AGSDAPLNVT FIRAPSSALL KVEVPLVFRG EDVSPGLKKG SYLNIIKRTV KFLCPADLIP
201: PYIDVDLSEL DVNQKLLMGD LRVHPALKLI QPKDHPVVKI AGARVSDQKK SK

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.