Factsheet for GSMUA_Achr2P08360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00620.t01	Wine grape	mitochondrion	68.7	69.77
Os05t0270000-01	Rice	mitochondrion	69.85	69.06
EES03203	Sorghum	mitochondrion	69.47	68.94
VIT_04s0023g00850.t01	Wine grape	mitochondrion	67.18	68.22
TraesCS3D01G215300.1	Wheat	mitochondrion	68.7	67.92
TraesCS3B01G243200.1	Wheat	mitochondrion	68.32	67.55
PGSC0003DMT400040794	Potato	mitochondrion	59.54	67.53
Os01t0593500-00	Rice	mitochondrion	69.85	67.53
Zm00001d011263_P001	Maize	mitochondrion	66.03	67.05
TraesCS3A01G212900.1	Wheat	mitochondrion	67.94	66.67
KRG94894	Soybean	mitochondrion	65.27	66.54
PGSC0003DMT400002340	Potato	mitochondrion	62.98	65.74
Solyc11g018560.1.1	Tomato	mitochondrion	62.6	65.08
CDY44122	Canola	mitochondrion	64.89	63.43
Bra013716.1-P	Field mustard	mitochondrion	64.89	63.43
CDY41665	Canola	mitochondrion	64.89	62.73
CDY57655	Canola	mitochondrion	64.12	62.69
Bra010538.1-P	Field mustard	mitochondrion	63.74	61.62
AT4G23620.2	Thale cress	mitochondrion	64.89	61.37
CDY24807	Canola	mitochondrion	63.36	61.25
CDX98162	Canola	cytosol	31.3	59.42
HORVU3Hr1G051530.1	Barley	plastid	67.94	59.14
KRH06647	Soybean	nucleus	48.09	52.28
CDY41659	Canola	plastid	17.18	40.91
CDY10889	Canola	cytosol	20.23	30.11

Protein Annotations

Gene3D:2.170.120.20	Gene3D:2.40.240.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0050897	EnsemblPlantsGene:GSMUA_Achr2G08360_001
EnsemblPlants:GSMUA_Achr2P08360_001	EnsemblPlants:GSMUA_Achr2T08360_001	InterPro:IPR020056	InterPro:IPR037121	UniProt:M0S677	PFAM:PD012503
PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	InterPro:Rbsml_L25/Gln-tRNA_synth_N	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI000296DB83	SEG:seg	:

Description

ribosomal protein L25, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G08360_001]

Coordinates

chr2:-:12363978..12366831

Molecular Weight (calculated)

28891.4 Da

IEP (calculated)

10.337

GRAVY (calculated)

-0.243

Length

262 amino acids

Sequence
(BLAST)

001: MLLRRSSETL RLSLIHLRPF SHAAAITPKE GAPLDPLAPL EYLEGLPRPD PKHAETIMAV PRASSGKIIS AKERKAGRVP SIVFEQENGE EGGNKRLVSV
101: QAKQVRKLVD HLGQSFFLSR LFELEVRSEF GGAGDLIEKV RVLPRKLHLH SATDAPLNVT FLRAPSSALL KVDVPLVFRG EDASPGLRKG SYLNVIKRTV
201: KYLCPADIVP PYIDVDLSEL DVGQKLVMRD LKVHPRLQLL QSPDQPVCKI AGSGAQEKKK SK

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.