Factsheet for VIT_04s0023g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00620.t01	Wine grape	mitochondrion	93.8	93.8
KRG94894	Soybean	mitochondrion	75.97	76.26
PGSC0003DMT400040794	Potato	mitochondrion	65.12	72.73
PGSC0003DMT400002340	Potato	mitochondrion	69.77	71.71
Solyc11g018560.1.1	Tomato	mitochondrion	68.6	70.24
CDX98162	Canola	cytosol	36.82	68.84
GSMUA_Achr2P08360_001	Banana	mitochondrion	68.22	67.18
Bra010538.1-P	Field mustard	mitochondrion	70.54	67.16
AT4G23620.2	Thale cress	mitochondrion	72.09	67.15
CDY24807	Canola	mitochondrion	70.16	66.79
CDY41665	Canola	mitochondrion	69.77	66.42
CDY57655	Canola	mitochondrion	68.99	66.42
Bra013716.1-P	Field mustard	mitochondrion	68.6	66.04
CDY44122	Canola	mitochondrion	68.6	66.04
TraesCS3B01G243200.1	Wheat	mitochondrion	65.5	63.77
TraesCS3D01G215300.1	Wheat	mitochondrion	65.5	63.77
Zm00001d011263_P001	Maize	mitochondrion	63.18	63.18
TraesCS3A01G212900.1	Wheat	mitochondrion	64.73	62.55
EES03203	Sorghum	mitochondrion	62.79	61.36
Os05t0270000-01	Rice	mitochondrion	62.79	61.13
Os01t0593500-00	Rice	mitochondrion	63.57	60.52
KRH06647	Soybean	nucleus	56.2	60.17
HORVU3Hr1G051530.1	Barley	plastid	65.12	55.81
CDY41659	Canola	plastid	21.32	50.0
VIT_00s1247g00020.t01	Wine grape	mitochondrion	35.27	36.84
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	35.27	36.55
CDY10889	Canola	cytosol	23.26	34.09

Protein Annotations

EntrezGene:100242725	wikigene:100242725	Gene3D:2.170.120.20	MapMan:35.2	ProteinID:CBI17602	ProteinID:CBI17602.3
UniProt:D7SPM3	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR037121	EntrezGene:LOC100242725
wikigene:LOC100242725	PFAM:PD012503	PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	InterPro:Ribosomal_L25
InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0001BE144C	ArrayExpress:VIT_04s0023g00850
EnsemblPlantsGene:VIT_04s0023g00850	EnsemblPlants:VIT_04s0023g00850.t01	RefSeq:XP_002276349	RefSeq:XP_002276349.2	RefSeq:XP_010649222.1	:

Description

No Description!

Coordinates

chr4:+:17259010..17265954

Molecular Weight (calculated)

28968.5 Da

IEP (calculated)

10.523

GRAVY (calculated)

-0.246

Length

258 amino acids

Sequence
(BLAST)

001: MLIHRHRQIL TNALHLRHFS QSAAAAVLQD PLEPPPLTYL EGFPRPDPKF AEIIRAIPRT ISGKNISAKE RKVGRVPSIV FEQEDGQHGG NKRLISVRTN
101: QIRKLVNHLG RSFFLSRLFD LEVGPDFESN EVIEKVRVLP RKLHLHAGTD AVLNVTFIRA PSHALLKVDV PLVFRGEDVS PGLKKGAYLN TIKRTVKYLC
201: PADIIPPYID VDLSELDAGQ KIVMGDLKVH PALKLLRSKD EPVCKIMGTR VSDQRKSK

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.