CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41659	Canola	plastid	28.41	45.45
CDX98162	Canola	cytosol	32.39	41.3
CDY57655	Canola	mitochondrion	39.2	25.75
CDY44122	Canola	mitochondrion	39.2	25.75
PGSC0003DMT400040794	Potato	mitochondrion	32.39	24.68
CDY24807	Canola	mitochondrion	36.36	23.62
PGSC0003DMT400002340	Potato	mitochondrion	33.52	23.51
AT4G23620.2	Thale cress	mitochondrion	36.93	23.47
Solyc11g018560.1.1	Tomato	mitochondrion	33.52	23.41
KRG94894	Soybean	mitochondrion	34.09	23.35
VIT_02s0025g00620.t01	Wine grape	mitochondrion	34.09	23.26
VIT_04s0023g00850.t01	Wine grape	mitochondrion	34.09	23.26
CDY41665	Canola	mitochondrion	35.8	23.25
GSMUA_Achr2P08360_001	Banana	mitochondrion	30.11	20.23
EES03203	Sorghum	mitochondrion	29.55	19.7
Os05t0270000-01	Rice	mitochondrion	28.98	19.25
Zm00001d011263_P001	Maize	mitochondrion	27.84	18.99
Os01t0593500-00	Rice	mitochondrion	28.98	18.82
TraesCS3B01G243200.1	Wheat	mitochondrion	27.84	18.49
TraesCS3D01G215300.1	Wheat	mitochondrion	27.84	18.49
TraesCS3A01G212900.1	Wheat	mitochondrion	27.84	18.35
HORVU3Hr1G051530.1	Barley	plastid	27.84	16.28
CDX81361	Canola	mitochondrion	14.77	15.12
CDY71642	Canola	mitochondrion	14.77	12.94
CDY12782	Canola	mitochondrion	17.05	12.1
CDY01458	Canola	mitochondrion	17.05	12.05
KRH06647	Soybean	nucleus	10.8	7.88

Protein Annotations

Gene3D:2.170.120.20	MapMan:35.2	GO:A0A078FD71	UniProt:A0A078FD71	EnsemblPlants:CDY10889	ProteinID:CDY10889
ProteinID:CDY10889.1	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00048787001	InterPro:IPR037121	PFAM:PF14693	PANTHER:PTHR33284	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0004EEBAE8	SEG:seg	:

Description

BnaC01g15040DBnaC01g15040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD71]

Coordinates

chrLK032007:+:656897..660456

Molecular Weight (calculated)

19642.9 Da

IEP (calculated)

10.581

GRAVY (calculated)

-0.573

Length

176 amino acids

Sequence
(BLAST)

001: MLSRAVLREH EQAEIVLAQD ANRLKLGSGR FAIEVQLHSR HTLPKYQLLH SSLEVTKQKK QAQGQTTIRG YQTKHCIFVG ATASSLVNVG LPLCPAEIIP
101: PYIDVDLSHL DVGQKLVTGD LKVHPALKLI KSKDEPVVKI AGGRVSDQQK DQAKKDQPKK DRRKTKQRNK PVSKSY

Best Arabidopsis Sequence Match ( AT4G23620.2 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAVKSPFLSL MKLIKIHLHS GTDAPLNVTF IRAPPGALLK VDIPLVFIGD DVSPGLKKGA
201: SLNTIKRTVK FLCPAEIIPP YIEVDLSQLD IGQKLVMGDL KVHPALKLIK SKDEPIVKVA GGRVTDTQKK SSDTQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.