Factsheet for PGSC0003DMT400040794

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002340	Potato	mitochondrion	90.91	83.67
VIT_02s0025g00620.t01	Wine grape	mitochondrion	73.59	65.89
VIT_04s0023g00850.t01	Wine grape	mitochondrion	72.73	65.12
KRG94894	Soybean	mitochondrion	70.13	63.03
CDX98162	Canola	cytosol	36.36	60.87
GSMUA_Achr2P08360_001	Banana	mitochondrion	67.53	59.54
Bra010538.1-P	Field mustard	mitochondrion	69.26	59.04
CDY24807	Canola	mitochondrion	69.26	59.04
CDY41665	Canola	mitochondrion	68.83	58.67
CDY57655	Canola	mitochondrion	67.97	58.58
Bra013716.1-P	Field mustard	mitochondrion	67.53	58.21
CDY44122	Canola	mitochondrion	67.53	58.21
AT4G23620.2	Thale cress	mitochondrion	69.26	57.76
Zm00001d011263_P001	Maize	mitochondrion	64.07	57.36
TraesCS3D01G215300.1	Wheat	mitochondrion	64.94	56.6
TraesCS3B01G243200.1	Wheat	mitochondrion	64.5	56.23
TraesCS3A01G212900.1	Wheat	mitochondrion	64.5	55.81
EES03203	Sorghum	mitochondrion	62.77	54.92
Os05t0270000-01	Rice	mitochondrion	61.9	53.96
Os01t0593500-00	Rice	mitochondrion	61.9	52.77
KRH06647	Soybean	nucleus	52.38	50.21
HORVU3Hr1G051530.1	Barley	plastid	64.5	49.5
CDY41659	Canola	plastid	21.21	44.55
CDY10889	Canola	cytosol	24.68	32.39
PGSC0003DMT400026094	Potato	mitochondrion, plastid	32.47	30.12

Protein Annotations

EntrezGene:102598427	Gene3D:2.170.120.20	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121	UniProt:M1BAF3	PFAM:PD012503
PFAM:PF01386	PFAM:PF14693	EnsemblPlantsGene:PGSC0003DMG400015775	PGSC:PGSC0003DMG400015775	EnsemblPlants:PGSC0003DMT400040794	PANTHER:PTHR33284
InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI0002949A8D
RefSeq:XP_006339913.1	:	:	:	:	:

Description

Ribosomal protein L25 [Source:PGSC_GENE;Acc:PGSC0003DMG400015775]

Coordinates

chr2:+:44013359..44019569

Molecular Weight (calculated)

26063.7 Da

IEP (calculated)

10.235

GRAVY (calculated)

-0.202

Length

231 amino acids

Sequence
(BLAST)

001: MLIRRIVLTK SLHHFRFFSH YAETIHAVVR VTSGKNKNIA AKERKAGRVP SIVFEQEDGQ RGGNKRLISV QANQIRKLVN HLGRSHFLSR LFDLEVHPDF
101: ESTDVIEKVR VLPRKVHLEA GSDAPLNVTF IRAPSSALLK VEDPLVFRGE DVSPGLKKGS YLNIIKRTVK FLCPADVIPP YIDVDLSELD VNQKLLMGDV
201: RVHPALKLIQ PEDHPVVKIA GARVSDQNDF Y

Best Arabidopsis Sequence Match ( AT4G23620.1 )
(BLAST)

001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN
101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC
201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JPA3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.