CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037144.1-P	Field mustard	cytosol	91.54	92.0
CDY12782	Canola	mitochondrion	80.6	65.32
CDY01458	Canola	mitochondrion	80.1	64.66
CDX81361	Canola	mitochondrion	53.73	62.79
AT5G66860.1	Thale cress	mitochondrion	72.14	58.23
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	56.22	45.38
KRH04667	Soybean	mitochondrion	41.79	45.16
VIT_00s1247g00020.t01	Wine grape	mitochondrion	55.22	44.94
KRH57744	Soybean	mitochondrion	54.23	44.31
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	52.74	43.8
PGSC0003DMT400026094	Potato	mitochondrion, plastid	51.74	41.77
EER91230	Sorghum	mitochondrion	46.27	38.75
Zm00001d013730_P001	Maize	mitochondrion	45.77	38.49
HORVU4Hr1G013640.1	Barley	mitochondrion	43.28	36.71
TraesCS4A01G235000.1	Wheat	mitochondrion	43.28	36.71
TraesCS4B01G080000.1	Wheat	mitochondrion	43.28	36.71
TraesCS4D01G078900.1	Wheat	mitochondrion	42.79	36.29
CDX98162	Canola	cytosol	20.9	30.43
Os03t0612600-01	Rice	mitochondrion, nucleus	25.37	29.14
CDY44122	Canola	mitochondrion	32.84	24.63
CDY57655	Canola	mitochondrion	32.34	24.25
CDY41665	Canola	mitochondrion	30.85	22.88
CDY24807	Canola	mitochondrion	30.35	22.51
CDY41659	Canola	plastid	10.95	20.0
CDY10889	Canola	cytosol	12.94	14.77

Protein Annotations

EnsemblPlants:CDY71642	EnsemblPlantsGene:GSBRNA2T00017775001	Gene3D:2.170.120.20	GO:A0A078K190	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	PFAM:PF14693	ProteinID:CDY71642
ProteinID:CDY71642.1	SUPFAM:SSF50715	UniParc:UPI0004EEC2C0	UniProt:A0A078K190	MapMan:35.2	:

Description

BnaA09g52520DBnaA09g52520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K190]

Coordinates

chrLK046751:-:567..1871

Molecular Weight (calculated)

22232.1 Da

IEP (calculated)

10.199

GRAVY (calculated)

-0.235

Length

201 amino acids

Sequence
(BLAST)

001: MAKWWRGLRS MVEEADLSAS SFVRSLRCLH QDETIQAIPR EATGRRVSAR DRTIGRIPAV LQTRAGQGSS SLVESGQVLP LKIHRDEESG KILKFSIRND
101: GEQLKVDVPL VFKWLDNCPG IKKAGGSLRS MRSSLKLIGP VEHMPSKIEV EVSKLDTGDR VLMQEVVFHP SLKLLSKNET LPVCKIAATS PVKEPEAVLS
201: I

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.