Factsheet for TraesCS4B01G080000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G078900.1	Wheat	mitochondrion	99.58	99.58
HORVU4Hr1G013640.1	Barley	mitochondrion	99.16	99.16
TraesCS4A01G235000.1	Wheat	mitochondrion	98.73	98.73
EER91230	Sorghum	mitochondrion	84.81	83.75
Zm00001d013730_P001	Maize	mitochondrion	83.97	83.26
Os03t0612600-01	Rice	mitochondrion, nucleus	61.18	82.86
VIT_00s1247g00020.t01	Wine grape	mitochondrion	49.37	47.37
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	49.37	46.99
AT5G66860.1	Thale cress	mitochondrion	48.52	46.18
CDY12782	Canola	mitochondrion	47.26	45.16
Bra012111.1-P	Field mustard	mitochondrion	47.26	44.98
CDY01458	Canola	mitochondrion	47.26	44.98
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	45.57	44.63
KRH04667	Soybean	mitochondrion	34.6	44.09
KRH57744	Soybean	mitochondrion	45.57	43.9
Bra037144.1-P	Field mustard	cytosol	36.71	43.5
CDY71642	Canola	mitochondrion	36.71	43.28
PGSC0003DMT400026094	Potato	mitochondrion, plastid	45.15	42.97
CDX81361	Canola	mitochondrion	29.96	41.28
TraesCS3B01G243200.1	Wheat	mitochondrion	32.07	28.68

Protein Annotations

Gene3D:2.170.120.20	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121	PFAM:PF01386
PFAM:PF14693	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C
InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	EnsemblPlantsGene:TraesCS4B01G080000	EnsemblPlants:TraesCS4B01G080000.1	TIGR:cd00495	:

Description

No Description!

Coordinates

chr4B:-:77661052..77664156

Molecular Weight (calculated)

25432.2 Da

IEP (calculated)

10.193

GRAVY (calculated)

-0.131

Length

237 amino acids

Sequence
(BLAST)

001: MAQCLRGKGG AAAVGEALRK AAPWRRAASA SYHHTIQAVP RETAGPRAAA RERRNGNVPA VLLTLAGAGP GEGVAHRKLL TTDKKQLAEM LKQSPYFLST
101: PVRLQVRAGE RSTAVVHSGT VLPIKVQTDE STGNILNLVM VEADEGTMLK VNLPVVFKGE DVCPGLKKGG FLQKIRTSLV YLCPAEHIPP KIEVDLTNVD
201: IGDRVLMQDI PVHPSLKLLS KNETMPVCKV LSSKPAE

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.