Factsheet for Os03t0612600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 6
peroxisome 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G080000.1	Wheat	mitochondrion	82.86	61.18
HORVU4Hr1G013640.1	Barley	mitochondrion	82.29	60.76
TraesCS4D01G078900.1	Wheat	mitochondrion	82.29	60.76
TraesCS4A01G235000.1	Wheat	mitochondrion	81.71	60.34
EER91230	Sorghum	mitochondrion	77.71	56.67
Zm00001d013730_P001	Maize	mitochondrion	77.14	56.49
VIT_00s1247g00020.t01	Wine grape	mitochondrion	46.29	32.79
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	46.29	32.53
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	42.86	30.99
CDY12782	Canola	mitochondrion	43.43	30.65
AT5G66860.1	Thale cress	mitochondrion	43.43	30.52
CDY01458	Canola	mitochondrion	43.43	30.52
Bra012111.1-P	Field mustard	mitochondrion	42.86	30.12
PGSC0003DMT400026094	Potato	mitochondrion, plastid	42.86	30.12
KRH57744	Soybean	mitochondrion	40.57	28.86
CDY71642	Canola	mitochondrion	29.14	25.37
KRH04667	Soybean	mitochondrion	26.86	25.27
Bra037144.1-P	Field mustard	cytosol	28.57	25.0
Os01t0593500-00	Rice	mitochondrion	31.43	20.3
Os05t0270000-01	Rice	mitochondrion	29.71	19.62
CDX81361	Canola	mitochondrion	18.29	18.6

Protein Annotations

MapMan:35.2	UniProt:A0A0P0W059	ProteinID:BAS85264.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:Os03g0612600
EnsemblPlants:Os03t0612600-01	PFAM:PF01386	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	InterPro:Ribosomal_L25	InterPro:Ribosomal_L25/Gln-tRNA_synth
SUPFAM:SSF50715	UniParc:UPI0000E1214B	SEG:seg	:	:	:

Description

Similar to Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 containing protein, expressed. (Os03t0612600-01)

Coordinates

chr3:-:23135535..23140171

Molecular Weight (calculated)

18578.5 Da

IEP (calculated)

10.572

GRAVY (calculated)

-0.212

Length

175 amino acids

Sequence
(BLAST)

001: AAAAAVGEAL RRGASTAPWR RAASASYHHT IQALPRETAG PRAAARERRS GRVPAVLLAL AGAGPGEGVA HRKLLTADRK QLGEILKQSP YFLSTPVRLQ
101: VRAGERSTAV VHSGTVLPIK VHRDETTGNI LNLVLVEADE GTMLKVNLPV EFKGEDVCPG LKKENKDQLG VSLPC

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.