Factsheet for Bra037144.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71642	Canola	mitochondrion	92.0	91.54
Bra012111.1-P	Field mustard	mitochondrion	79.0	63.45
AT5G66860.1	Thale cress	mitochondrion	74.5	59.84
KRH04667	Soybean	mitochondrion	43.5	46.77
VIT_00s1247g00020.t01	Wine grape	mitochondrion	56.0	45.34
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	54.0	44.63
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	55.5	44.58
KRH57744	Soybean	mitochondrion	53.5	43.5
PGSC0003DMT400026094	Potato	mitochondrion, plastid	53.0	42.57
Zm00001d013730_P001	Maize	mitochondrion	45.5	38.08
EER91230	Sorghum	mitochondrion	45.5	37.92
HORVU4Hr1G013640.1	Barley	mitochondrion	43.5	36.71
TraesCS4A01G235000.1	Wheat	mitochondrion	43.5	36.71
TraesCS4B01G080000.1	Wheat	mitochondrion	43.5	36.71
TraesCS4D01G078900.1	Wheat	mitochondrion	43.0	36.29
Os03t0612600-01	Rice	mitochondrion, nucleus	25.0	28.57
Bra013716.1-P	Field mustard	mitochondrion	33.0	24.63
Bra010538.1-P	Field mustard	mitochondrion	30.5	22.51

Protein Annotations

EnsemblPlants:Bra037144.1	EnsemblPlants:Bra037144.1-P	EnsemblPlantsGene:Bra037144	Gene3D:2.170.120.20	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037121	InterPro:Ribosomal_L25/Gln-tRNA_synth
InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	PFAM:PF14693	SUPFAM:SSF50715
UniParc:UPI0002541D13	UniProt:M4F7T3	MapMan:35.2	:	:	:

Description

AT5G66860 (E=7e-057) | INVOLVED IN: translation; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT4G23620.1); Has 2346 Blast hits to 2345 proteins in 433 species: Archae - 0; Bacteria - 930; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).

Coordinates

chrA09:-:4281902..4283067

Molecular Weight (calculated)

22084.9 Da

IEP (calculated)

10.007

GRAVY (calculated)

-0.211

Length

200 amino acids

Sequence
(BLAST)

001: MAKWWRGLRS VAEEADLSAS SFVRSVRCLH QDETIQAIPR EATGRRVSAR DQTTGRIPAV LQIRAGQGSS SLVESGQILP LKIHRDEESG KILKFSIRND
101: GEQLKVDVPL VFKWLDNCPG IKKGGSLRSM RSSLKLIGPV EHMPSKIEVE VSKLDIGDRV LMQEVVFHPS LKLLSKNETL PVCKIAATSP VKEPEAVLSI

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.