Factsheet for VIT_00s1247g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0197g00010.t01	Wine grape	mitochondrion, plastid	97.17	96.39
KRH57744	Soybean	mitochondrion	65.18	65.45
Solyc02g090420.2.1	Tomato	endoplasmic reticulum	60.32	61.57
CDY12782	Canola	mitochondrion	61.13	60.89
AT5G66860.1	Thale cress	mitochondrion	61.13	60.64
CDY01458	Canola	mitochondrion	61.13	60.64
Bra012111.1-P	Field mustard	mitochondrion	60.32	59.84
PGSC0003DMT400026094	Potato	mitochondrion, plastid	60.32	59.84
KRH04667	Soybean	mitochondrion	44.94	59.68
Bra037144.1-P	Field mustard	cytosol	45.34	56.0
CDY71642	Canola	mitochondrion	44.94	55.22
Zm00001d013730_P001	Maize	mitochondrion	48.58	50.21
EER91230	Sorghum	mitochondrion	48.18	49.58
CDX81361	Canola	mitochondrion	34.41	49.42
HORVU4Hr1G013640.1	Barley	mitochondrion	47.37	49.37
TraesCS4B01G080000.1	Wheat	mitochondrion	47.37	49.37
TraesCS4D01G078900.1	Wheat	mitochondrion	47.37	49.37
TraesCS4A01G235000.1	Wheat	mitochondrion	46.96	48.95
Os03t0612600-01	Rice	mitochondrion, nucleus	32.79	46.29
VIT_02s0025g00620.t01	Wine grape	mitochondrion	36.84	35.27
VIT_04s0023g00850.t01	Wine grape	mitochondrion	36.84	35.27

Protein Annotations

EntrezGene:100854002	wikigene:100854002	Gene3D:2.170.120.20	MapMan:35.2	ProteinID:CCB54197	ProteinID:CCB54197.1
UniProt:F6HJU4	EMBL:FN595843	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008097	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR037121	EntrezGene:LOC100854002
wikigene:LOC100854002	PFAM:PF01386	PFAM:PF14693	PANTHER:PTHR33284	PANTHER:PTHR33284:SF2	InterPro:Ribosomal_L25
InterPro:Ribosomal_L25/Gln-tRNA_synth	InterPro:Ribosomal_L25_C	InterPro:Ribosomal_L25_b-dom	SUPFAM:SSF50715	UniParc:UPI00021098DC	ArrayExpress:VIT_00s1247g00020
EnsemblPlantsGene:VIT_00s1247g00020	EnsemblPlants:VIT_00s1247g00020.t01	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:38161354..38164171

Molecular Weight (calculated)

27039.9 Da

IEP (calculated)

10.331

GRAVY (calculated)

-0.118

Length

247 amino acids

Sequence
(BLAST)

001: MSRWWGAAAG RLRTAVSNRR SLYLSSLPPA AAYHTIQAIS REFTGSKVSA RDRAQGRIPA VVFAQQLLTG GNMNGRSVSR KRLLTTERKQ IQAILKSVEP
101: EFICSTTFPL QIRAGSGSSV LLESGTVLPL KIHRDEATGK VLNLVFAWAD EGSELKVDVP LVFKGEDVCP GLKKGGYLNR IRPSLKFLCP AEHIPSKIEV
201: DVSNLDIGDR ILMHDVEVHP SLKLLSKNET MPVCKIVAAK LERAESG

Best Arabidopsis Sequence Match ( AT5G66860.1 )
(BLAST)

001: MAKWWRGLRS VTAEVADLPA SSFGRSIRCI HQYQTIQAIP REATGRGVSA RDRTIGRIPA VVFPQSLLDT DASKRGVSRK QLLTADKKQI KSIIDSVGLP
101: FFCSTTFQLQ IRAGQGSSTL VESGRVLPLK VHRDEETGKI LNLVFVWADD GEKLKVDVPV VFKGLDHCPG LQKGGNLRTI RSTLKLLGPA EHIPSKIEVD
201: VSNLDIEDKV LLQDVVFHPS LKLLSKNETM PVCKIVATSP VKEPEAVQA

Arabidopsis Description

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FKZ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.