CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56375	Canola	mitochondrion	97.74	97.3
CDY01075	Canola	cytosol, plasma membrane, plastid	22.17	31.21
CDY69719	Canola	cytosol, golgi, peroxisome	59.28	30.68
CDY64226	Canola	peroxisome	61.09	26.95
CDX74912	Canola	peroxisome	60.18	26.55
CDX93327	Canola	golgi, peroxisome, plasma membrane	60.18	26.55
CDY38016	Canola	plasma membrane	46.15	20.2
CDX90045	Canola	plasma membrane	45.7	20.08
CDY15166	Canola	plasma membrane	45.7	20.08
CDY08475	Canola	plasma membrane	35.29	17.77
CDY60435	Canola	plasma membrane	34.39	13.43
CDY08528	Canola	cytosol	24.43	13.33
CDX98902	Canola	plasma membrane	33.48	13.29
CDY56848	Canola	plasma membrane	23.98	13.02
CDY06647	Canola	plasma membrane	33.48	12.96
CDY66042	Canola	plasma membrane	23.53	12.75
CDY10206	Canola	plasma membrane	31.67	12.35
CDY22016	Canola	plasma membrane	20.36	9.87
CDY07108	Canola	plasma membrane	19.91	9.65
CDX89973	Canola	endoplasmic reticulum, golgi	18.55	9.01
CDY15240	Canola	endoplasmic reticulum, golgi	18.1	8.79
CDY08476	Canola	cytosol	3.62	6.4
CDY71692	Canola	golgi, plasma membrane	2.71	1.95
CDY01076	Canola	extracellular, plasma membrane	0.45	0.5
CDY71660	Canola	cytosol, plasma membrane	0.45	0.36
CDY71876	Canola	cytosol, extracellular, mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY22002	EnsemblPlantsGene:GSBRNA2T00018353001	Gene3D:1.20.1440.100	Gene3D:3.40.50.1000	GO:A0A078GAH3	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	PANTHER:PTHR15486
PANTHER:PTHR15486:SF27	PFAM:PF12710	ProteinID:CDY22002	ProteinID:CDY22002.1	SEG:seg	SUPFAM:SSF56784
TMHMM:TMhelix	UniParc:UPI0004EE0054	UniProt:A0A078GAH3	MapMan:35.1	:	:

Description

BnaC09g01080DBnaC09g01080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAH3]

Coordinates

chrLK032126:-:616840..617866

Molecular Weight (calculated)

24400.0 Da

IEP (calculated)

10.304

GRAVY (calculated)

0.148

Length

221 amino acids

Sequence
(BLAST)

001: MGTMTKRRRF KPMSSYNVNA EDRSNQTVVA DLDGTLTSSS RPLLYFFLVA LKAGSLLRAL ILLASVPLVH LTYLFVSESL AVKVAVFITF AGLKLGDVEH
101: VARHVLARVY EKELKRDTWR IFEAFGKRYI VTASPRVMVE PFAKNFLGAD KVIGTELGFT RFGWLTGFAR KPGVMLGKQK RDAVLKEFSG GGGGIGLPDL
201: GLGDSQSDYA FMSLCKEAYM V

Best Arabidopsis Sequence Match ( AT1G01610.1 )
(BLAST)

001: MSPAKKSRSF PPISECKSRE YDSIAADLDG TLLLSRSSFP YFMLVAIEAG SLFRGLILLL SLPIVIIAYL FVSESLGIQI LIFISFAGIK IKNIELVSRA
101: VLTRFYAADV RKDSFEVFDK CKKRKVVVTA NPIVMVEPFV KDYLGGDKVL GTEIEVNPKT MKATGFVKKP GVLVGDLKRL AILKEFGDDS PDLGLGDRTS
201: DHDFMSICKE GYMVHETKSA TTVPIESLKN RIIFHDGRLV QRPTPLNALI IYLWLPFGFM LSVFRVYFNL PLPERFVRYT YEILGIHLTI RGHRPPPPSP
301: GKPGNLYVLN HRTALDPIII AIALGRKITC VTYSVSRLSL MLSPIPAVAL TRDRVADAAR MRQLLEKGDL VICPEGTTCR EPYLLRFSAL FAELSDRIVP
401: VAMNCKQGMF NGTTVRGVKF WDPYFFFMNP RPSYEATFLD RLPEEMTVNG GGKTPFEVAN YVQKVIGGVL GFECTELTRK DKYLLLGGND GKVESINKTK
501: SME

Arabidopsis Description

GPAT4GPAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178W9F8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.