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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane
BaCelLo:cytosol
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034796.1-P Field mustard plasma membrane 99.77 92.41
CDY01075 Canola cytosol, plasma membrane, plastid 26.2 73.25
CDY08528 Canola cytosol 59.68 64.69
CDY56848 Canola plasma membrane 59.0 63.64
CDY66042 Canola plasma membrane 57.63 62.01
CDY01076 Canola extracellular, plasma membrane 26.65 57.92
AT3G11325.2 Thale cress endoplasmic reticulum, plasma membrane 50.8 56.74
CDY08476 Canola cytosol 15.95 56.0
CDY71660 Canola cytosol, plasma membrane 33.49 53.26
VIT_13s0019g01990.t01 Wine grape cytosol, endoplasmic reticulum, plasma membrane 59.0 53.18
Solyc04g011600.2.1 Tomato plasma membrane 59.0 52.75
KRH73056 Soybean cytosol, endoplasmic reticulum, plasma membrane 55.81 51.91
KRH15081 Soybean cytosol 55.58 51.69
CDX98902 Canola plasma membrane 64.46 50.81
PGSC0003DMT400016230 Potato golgi, mitochondrion, plasma membrane 45.56 50.51
CDY60435 Canola plasma membrane 64.92 50.35
Solyc05g053030.1.1 Tomato plasma membrane 52.39 45.82
GSMUA_Achr2P16430_001 Banana plasma membrane 44.42 43.72
Zm00001d010520_P001 Maize cytosol, endoplasmic reticulum, plasma membrane 49.43 43.57
GSMUA_Achr6P34050_001 Banana cytosol, peroxisome, plasma membrane 42.6 43.29
TraesCS1A01G283100.1 Wheat plasma membrane 50.34 43.08
TraesCS1D01G282300.1 Wheat plasma membrane 50.57 43.02
TraesCS1B01G292200.1 Wheat plasma membrane 50.34 42.91
EES18341 Sorghum plastid 50.34 42.34
Zm00001d038366_P001 Maize plasma membrane 48.97 41.99
CDY71876 Canola cytosol, extracellular, mitochondrion 15.49 41.46
Os05t0457800-01 Rice cytosol, peroxisome, plasma membrane 48.52 40.8
HORVU1Hr1G072590.2 Barley mitochondrion 50.11 39.93
GSMUA_Achr10P... Banana plasma membrane 28.93 39.32
CDX93327 Canola golgi, peroxisome, plasma membrane 42.37 37.13
CDY64226 Canola peroxisome 41.69 36.53
CDX74912 Canola peroxisome 41.69 36.53
CDY38016 Canola plasma membrane 41.46 36.04
CDY15166 Canola plasma membrane 40.77 35.59
CDX90045 Canola plasma membrane 40.77 35.59
CDY56375 Canola mitochondrion 18.0 35.59
CDY22002 Canola mitochondrion 17.77 35.29
CDY69719 Canola cytosol, golgi, peroxisome 33.49 34.43
CDY22016 Canola plasma membrane 33.49 32.24
CDY71692 Canola golgi, plasma membrane 22.1 31.49
CDX89973 Canola endoplasmic reticulum, golgi 32.57 31.43
CDY07108 Canola plasma membrane 32.12 30.92
CDY15240 Canola endoplasmic reticulum, golgi 31.89 30.77
CDY10206 Canola plasma membrane 39.18 30.34
CDY06647 Canola plasma membrane 39.41 30.3
PGSC0003DMT400069796 Potato plasma membrane 48.52 28.51
Protein Annotations
EnsemblPlants:CDY08475EnsemblPlantsGene:GSBRNA2T00000243001GO:A0A078F1Z3GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR15486PANTHER:PTHR15486:SF25ProteinID:CDY08475ProteinID:CDY08475.1SUPFAM:SSF69593TMHMM:TMhelix
UniParc:UPI0004EE0906UniProt:A0A078F1Z3MapMan:35.1:::
Description
BnaA05g27110DBnaA05g27110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F1Z3]
Coordinates
chrLK031986:-:324902..327100
Molecular Weight (calculated)
49172.5 Da
IEP (calculated)
8.097
GRAVY (calculated)
0.343
Length
439 amino acids
Sequence
(BLAST)
001: MVMEETSRTT SPYSVVSECE GTLLKSNDPF SYFMLLAFDA SGVIRFAILL FLWPVTTLLN VFSYKNAALK LMIFVATAGL RESDIELVSR IVLPKFYMDD
101: LSMDTWKVFS SCKKRIVVTR MPRVMVEWFA KEHLSAQEVI GTELIVNRFG FLTGLIQETD IDTIVLNRVA SLFVDRKPHL GLGRRPALSN STTFLSLCEE
201: QIHESNKWNQ QVEVQPPKPV IFHDGGLVKR PTPATALTIL IWFPFGIILA VIRILGVFVL PMWLIPYVIS LSGCRVTVKG KPPHTAGNSG GVLFVCNHIT
301: TIDPVVISYA LGHTTPILAK GDLVVCPEGT ICHQPFLLRF SALFAELTDR IVPVAISCRF GFFRRTLKSW NGFNLILLFM NPTLDYEITF LDQLPLEATC
401: SSGKSPYDVA NNVQRVLADT LGFECTELGR KAKYNILTF
Best Arabidopsis Sequence Match ( AT1G01610.1 )
(BLAST)
001: MSPAKKSRSF PPISECKSRE YDSIAADLDG TLLLSRSSFP YFMLVAIEAG SLFRGLILLL SLPIVIIAYL FVSESLGIQI LIFISFAGIK IKNIELVSRA
101: VLTRFYAADV RKDSFEVFDK CKKRKVVVTA NPIVMVEPFV KDYLGGDKVL GTEIEVNPKT MKATGFVKKP GVLVGDLKRL AILKEFGDDS PDLGLGDRTS
201: DHDFMSICKE GYMVHETKSA TTVPIESLKN RIIFHDGRLV QRPTPLNALI IYLWLPFGFM LSVFRVYFNL PLPERFVRYT YEILGIHLTI RGHRPPPPSP
301: GKPGNLYVLN HRTALDPIII AIALGRKITC VTYSVSRLSL MLSPIPAVAL TRDRVADAAR MRQLLEKGDL VICPEGTTCR EPYLLRFSAL FAELSDRIVP
401: VAMNCKQGMF NGTTVRGVKF WDPYFFFMNP RPSYEATFLD RLPEEMTVNG GGKTPFEVAN YVQKVIGGVL GFECTELTRK DKYLLLGGND GKVESINKTK
501: SME
Arabidopsis Description
GPAT4GPAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178W9F8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.