CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26012	Canola	extracellular	97.31	79.2
Bra019013.1-P	Field mustard	extracellular	97.76	78.99
CDY26013	Canola	extracellular	88.79	72.0
CDY24120	Canola	extracellular	88.34	71.9
AT1G53070.1	Thale cress	extracellular	81.17	66.54
CDY24118	Canola	extracellular	65.92	52.31
CDY44359	Canola	extracellular	55.61	45.76
CDY66969	Canola	extracellular	54.71	44.85
CDY34609	Canola	extracellular	42.15	44.76
CDY34610	Canola	cytosol	9.42	44.68
CDY34817	Canola	extracellular	52.02	44.44
CDY72663	Canola	extracellular	52.02	43.45
CDX97656	Canola	extracellular	52.91	42.75
CDY20121	Canola	extracellular	51.12	41.3
CDY21835	Canola	extracellular	50.22	40.58
CDX75822	Canola	plastid	20.18	38.46
HORVU2Hr1G043510.1	Barley	extracellular	23.32	20.08
HORVU5Hr1G036880.1	Barley	cytosol	15.7	19.23
HORVU3Hr1G113660.1	Barley	extracellular, vacuole	25.56	16.72
GSMUA_Achr6P33000_001	Banana	golgi	25.56	16.62
HORVU7Hr1G009980.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	24.22	15.84
HORVU2Hr1G099010.1	Barley	cytosol	17.49	10.86
HORVU1Hr1G013700.1	Barley	plastid, vacuole	26.91	7.91

Protein Annotations

EnsemblPlants:CDY24119	EnsemblPlantsGene:GSBRNA2T00024671001	Gene3D:2.60.120.200	GO:A0A078GFL9	GO:GO:0003674	GO:GO:0005488
GO:GO:0030246	InterPro:ConA-like_dom_sf	InterPro:L-lectin	InterPro:Legume_lectin_dom	PANTHER:PTHR32401	PANTHER:PTHR32401:SF5
PFAM:PF00139	PIRSF:PIRSF002690	ProteinID:CDY24119	ProteinID:CDY24119.1	SUPFAM:SSF49899	UniParc:UPI0004EEB385
UniProt:A0A078GFL9	MapMan:18.4.1.19	:	:	:	:

Description

BnaA06g01170DBnaA06g01170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFL9]

Coordinates

chrLK032153:-:565210..565881

Molecular Weight (calculated)

24965.5 Da

IEP (calculated)

9.171

GRAVY (calculated)

-0.293

Length

223 amino acids

Sequence
(BLAST)

001: MSRSGALGLT QFRIPFSHGR AIYINPITFK PPNNASSVYP FKTSFTFSIT PHNTNPTPGH GFAFLVVPRN QDDAASGLGY LSLVNRTSNG NPNNHLFAVE
101: FDVFQDKYLH DINDNHVGID INSVDSVTSV KSGYWVMTRS GWLFKDLKLS SGDKYTAWIE YNNNLKVISV TIGLAHLKKP NRPLIEAKYD LSNVLLEKMY
201: AGFAGSMGRG VETHEVWDWT FQN

Best Arabidopsis Sequence Match ( AT1G53070.1 )
(BLAST)

001: MKIQILCFTT LFLAIFTSQV TTAYKFKFDY FGNGTDPISF HGDAEYGPDT DGKSRSGAIA LTRDNIPFSH GRAIFTTPIT FKPNASALYP FKTSFTFSIT
101: PKTNPNQGHG LAFIVVPSNQ NDAGSGLGYL SLLNRTNNGN PNNHLFAVEF DVFQDKSLGD MNDNHVGIDI NSVDSVVSVK SGYWVMTRSG WLFKDLKLSS
201: GDRYKAWIEY NNNYKVVSVT IGLAHLKKPN RPLIEAKFDL SKVIHEVMYT GFAGSMGRGV ERHEIWDWTF QN

Arabidopsis Description

Lectin-like protein At1g53070 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNN2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.