CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019012.1-P	Field mustard	extracellular	94.18	94.53
CDY24120	Canola	extracellular	93.82	94.16
CDY24119	Canola	mitochondrion, plastid	72.0	88.79
CDY26012	Canola	extracellular	85.09	85.4
AT1G53070.1	Thale cress	extracellular	77.45	78.31
CDY24118	Canola	extracellular	62.18	60.85
CDY34609	Canola	extracellular	43.27	56.67
CDY34817	Canola	extracellular	52.36	55.17
CDY72663	Canola	extracellular	50.18	51.69
CDX97656	Canola	extracellular	51.64	51.45
CDY44359	Canola	extracellular	50.55	51.29
CDY66969	Canola	extracellular	49.45	50.0
CDY34610	Canola	cytosol	8.36	48.94
CDY21835	Canola	extracellular	48.73	48.55
CDY20121	Canola	extracellular	48.36	48.19
CDX75822	Canola	plastid	17.09	40.17
HORVU2Hr1G043510.1	Barley	extracellular	23.27	24.71
HORVU5Hr1G036880.1	Barley	cytosol	13.45	20.33
HORVU3Hr1G113660.1	Barley	extracellular, vacuole	25.09	20.23
GSMUA_Achr6P33000_001	Banana	golgi	24.36	19.53
HORVU7Hr1G009980.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	24.0	19.35
HORVU2Hr1G099010.1	Barley	cytosol	14.91	11.42
HORVU1Hr1G013700.1	Barley	plastid, vacuole	26.55	9.62

Protein Annotations

EnsemblPlants:CDY26013	EnsemblPlantsGene:GSBRNA2T00033551001	Gene3D:2.60.120.200	GO:A0A078GN33	GO:GO:0003674	GO:GO:0005488
GO:GO:0030246	InterPro:ConA-like_dom_sf	InterPro:L-lectin	InterPro:Legume_lectin_dom	PANTHER:PTHR32401	PANTHER:PTHR32401:SF5
PFAM:PF00139	PIRSF:PIRSF002690	ProteinID:CDY26013	ProteinID:CDY26013.1	SignalP:SignalP-noTM	SUPFAM:SSF49899
TMHMM:TMhelix	UniParc:UPI0004EB9B52	UniProt:A0A078GN33	MapMan:18.4.1.19	:	:

Description

BnaC06g06110DBnaC06g06110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN33]

Coordinates

chrLK032184:-:216500..217493

Molecular Weight (calculated)

30760.2 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.264

Length

275 amino acids

Sequence
(BLAST)

001: MTTMQTLCFI TLFIAIFTSQ TTSAYRFKFN HFGNSTDLFS FHGDAEYGHD TDGTTRSGSL SLTKDKTPFS HGRAILINPI IFKPPNNASS VYPFKTSFTF
101: SITPHNTNPA PGHGFAFLVV PSNQHAGSGL GFLSLVNRTS NGNPSNHLFA VEFDVFQDKS FKDINDNHVG IDINSVDSVT SVKSGYWVMT RNGWLFKDLK
201: LNSGDKYTAW IEYNNNLKVI SVTIGFAHLK KPNRPLIEAK YDLSNVLLEK MYAGFAGSMG RGVERHEIWD WTFQN

Best Arabidopsis Sequence Match ( AT1G53070.1 )
(BLAST)

001: MKIQILCFTT LFLAIFTSQV TTAYKFKFDY FGNGTDPISF HGDAEYGPDT DGKSRSGAIA LTRDNIPFSH GRAIFTTPIT FKPNASALYP FKTSFTFSIT
101: PKTNPNQGHG LAFIVVPSNQ NDAGSGLGYL SLLNRTNNGN PNNHLFAVEF DVFQDKSLGD MNDNHVGIDI NSVDSVVSVK SGYWVMTRSG WLFKDLKLSS
201: GDRYKAWIEY NNNYKVVSVT IGLAHLKKPN RPLIEAKFDL SKVIHEVMYT GFAGSMGRGV ERHEIWDWTF QN

Arabidopsis Description

Lectin-like protein At1g53070 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNN2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.