CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007581_P001	Maize	plastid	79.66	84.93
Os11t0595200-01	Rice	plastid	70.34	75.56
TraesCS2A01G145900.1	Wheat	plastid	65.17	68.73
TraesCS2D01G150500.1	Wheat	plastid	63.79	66.79
HORVU0Hr1G039090.1	Barley	plastid	63.79	66.79
TraesCS2B01G171300.1	Wheat	plastid	62.41	65.58
KRG92362	Soybean	nucleus, plastid	58.97	64.53
KRH34425	Soybean	plastid	51.38	62.34
PGSC0003DMT400044209	Potato	plastid	58.62	61.82
Bra014946.1-P	Field mustard	plastid	58.97	61.73
CDX77518	Canola	plastid	58.97	61.73
CDX85096	Canola	plastid	57.93	61.54
Solyc09g090330.2.1	Tomato	plastid	57.93	60.87
VIT_05s0049g01360.t01	Wine grape	plastid	60.0	59.39
GSMUA_Achr10P...	Banana	plastid	55.52	58.55
AT3G23400.1	Thale cress	plastid	56.21	57.39
Os05t0304200-01	Rice	cytosol	17.59	32.48

Protein Annotations

MapMan:35.1	EntrezGene:8074339	UniProt:C5Y5G7	ncoils:Coil	EnsemblPlants:EES08771	ProteinID:EES08771
ProteinID:EES08771.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005886	GO:GO:0006950	GO:GO:0008150	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0010193	GO:GO:0010287	GO:GO:0016020	GO:GO:0016043	GO:GO:0031977
GO:GO:0042742	ProteinID:OQU83775.1	InterPro:PAP/fibrillin_dom	PFAM:PF04755	PANTHER:PTHR31906	PANTHER:PTHR31906:SF15
EnsemblPlantsGene:SORBI_3005G172400	unigene:Sbi.2177	UniParc:UPI0001A863C2	RefSeq:XP_002449783.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:65197370..65202501

Molecular Weight (calculated)

30503.2 Da

IEP (calculated)

8.844

GRAVY (calculated)

-0.210

Length

290 amino acids

Sequence
(BLAST)

001: MAAAPSSCCA ATASTSAPLR PARVQCSAPW VPGATRSIFR RRQLQRRQRE LSVRATAAAP PPPPVDYAAD AATGAGADYV ASLKIKLLSA VSGLNRGLAA
101: SQEDLDRADA AARELEAAGT AAGGPVDLNG GDLDKLQGRW RLLYSSAFSS RTLGGSRPGP PTGRLLPVTL GQVFQRIDVV SRDLDNIVEL ELGAPWPLPP
201: LEATATLAHK FEVVGTSGVK ITFEKTTVKT KGSLAQLPPL EVPRVPDNLR PPSSSSNAGS GEGEFEVTYL DDDTRITRGD RGELRVFVIA

Best Arabidopsis Sequence Match ( AT3G23400.1 )
(BLAST)

001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA

Arabidopsis Description

PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.