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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 21433289
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d007581_P001 Maize plastid 79.26 78.68
TraesCS2A01G145900.1 Wheat plastid 73.33 72.0
TraesCS2B01G171300.1 Wheat plastid 72.22 70.65
TraesCS2D01G150500.1 Wheat plastid 72.22 70.4
EES08771 Sorghum plastid 75.56 70.34
HORVU0Hr1G039090.1 Barley plastid 70.0 68.23
KRG92362 Soybean nucleus, plastid 63.7 64.91
KRH34425 Soybean plastid 57.04 64.44
VIT_05s0049g01360.t01 Wine grape plastid 67.78 62.46
Solyc09g090330.2.1 Tomato plastid 63.33 61.96
GSMUA_Achr10P... Banana plastid 62.59 61.45
PGSC0003DMT400044209 Potato plastid 62.59 61.45
Bra014946.1-P Field mustard plastid 60.0 58.48
CDX77518 Canola plastid 60.0 58.48
CDX85096 Canola plastid 58.89 58.24
AT3G23400.1 Thale cress plastid 60.37 57.39
Os05t0304200-01 Rice cytosol 22.22 38.22
Os05t0228900-01 Rice cytosol 11.48 18.56
Protein Annotations
EMBL:AK071115EMBL:AK106159EnsemblPlants:Os11t0595200-01EnsemblPlantsGene:Os11g0595200EntrezGene:4350844InterPro:PAP/fibrillin_dom
ncoils:CoilPANTHER:PTHR31906PANTHER:PTHR31906:SF15PFAM:PF04755ProteinID:ABA94630.1ProteinID:BAF28573.1
ProteinID:BAT14712.1ProteinID:EAZ18920.1RefSeq:XP_015615548.1SEG:segUniParc:UPI0000681F3BUniProt:Q2R1S1
MapMan:35.1:::::
Description
PAP fibrillin family protein. (Os11t0595200-01)
Coordinates
chr11:+:22660534..22662341
Molecular Weight (calculated)
28375.7 Da
IEP (calculated)
9.165
GRAVY (calculated)
-0.113
Length
270 amino acids
Sequence
(BLAST)
001: MAAAVASSCC ASTSARPLVR RAGSRNGKLW WAGGVRKARL LSISATAAAP SGVDYAAGTG AAADDDAVAA LKVKLLSAVS GLNRGLAASQ EDLDRADAAA
101: RELEAAAGGG PVDLERDVDK LQGRWRLVYS SAFSSRTLGG SRPGPPTGRL LPITLGQVFQ RIDVVSKDFD NIVDVELGAP WPLPPVELTA TLAHKFEIIG
201: TSSIKITFDK TTVKTKGNLS QLPPLEVPRI PDNLRPPSNT GSGEFEVTYL DGDTRITRGD RGELRVFVIS
Best Arabidopsis Sequence Match ( AT3G23400.1 )
(BLAST)
001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA
Arabidopsis Description
PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.