Factsheet for Zm00001d007581_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08771	Sorghum	plastid	84.93	79.66
Os11t0595200-01	Rice	plastid	78.68	79.26
TraesCS2A01G145900.1	Wheat	plastid	73.16	72.36
TraesCS2D01G150500.1	Wheat	plastid	72.43	71.12
HORVU0Hr1G039090.1	Barley	plastid	72.06	70.76
TraesCS2B01G171300.1	Wheat	plastid	70.96	69.93
KRG92362	Soybean	nucleus, plastid	65.07	66.79
KRH34425	Soybean	plastid	58.46	66.53
Solyc09g090330.2.1	Tomato	plastid	65.07	64.13
PGSC0003DMT400044209	Potato	plastid	64.71	64.0
VIT_05s0049g01360.t01	Wine grape	plastid	67.28	62.46
GSMUA_Achr10P...	Banana	plastid	61.76	61.09
CDX77518	Canola	plastid	62.13	61.01
Bra014946.1-P	Field mustard	plastid	62.13	61.01
CDX85096	Canola	plastid	60.66	60.44
AT3G23400.1	Thale cress	plastid	59.56	57.04
Os05t0304200-01	Rice	cytosol	19.49	33.76

Protein Annotations

EntrezGene:100383635	MapMan:35.1	EMBL:AY388616	EMBL:BT067911	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006950
GO:GO:0008150	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0010193
GO:GO:0010287	GO:GO:0016020	GO:GO:0016043	GO:GO:0031977	GO:GO:0042742	ProteinID:ONM27118.1
InterPro:PAP/fibrillin_dom	PFAM:PF04755	PANTHER:PTHR31906	PANTHER:PTHR31906:SF15	UniProt:Q5QJA2	UniParc:UPI0000495FCC
EnsemblPlantsGene:Zm00001d007581	EnsemblPlants:Zm00001d007581_P001	EnsemblPlants:Zm00001d007581_T001	SEG:seg	:	:

Description

harpin binding protein1

Coordinates

chr2:-:235123301..235124690

Molecular Weight (calculated)

29256.8 Da

IEP (calculated)

10.008

GRAVY (calculated)

-0.230

Length

272 amino acids

Sequence
(BLAST)

001: MAATWSSSCC AATASSSALL RHARVKSAPW VAGASRSSYR QRRRRRELSI RATAAAPPPP VVYADAGADN VASLKIKLLS AVSGLNRGLA ASQEDLDRAD
101: AAARELEAAA GCPVDLSRDL DKLQGRWRLL YSSAFSSRTL GGSRPGPPTG RLLPITLGQV FQRIDVVSRD FDNIVELELG APWPLPPLEA TATLAHKFEI
201: IGTSGIKITF EKTTVKTKGN LSQLPPLEVP RIPDNLRPPS NTGSGEFEVT YLDDDTRVTR GDRGELRVFV IA

Best Arabidopsis Sequence Match ( AT3G23400.1 )
(BLAST)

001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA

Arabidopsis Description

PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.