CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34425	Soybean	plastid	65.28	72.38
Solyc09g090330.2.1	Tomato	plastid	70.19	67.39
PGSC0003DMT400044209	Potato	plastid	67.92	65.45
VIT_05s0049g01360.t01	Wine grape	plastid	72.08	65.19
GSMUA_Achr10P...	Banana	plastid	67.55	65.09
Zm00001d007581_P001	Maize	plastid	66.79	65.07
Os11t0595200-01	Rice	plastid	64.91	63.7
CDX85096	Canola	plastid	61.13	59.34
TraesCS2A01G145900.1	Wheat	plastid	61.51	59.27
Bra014946.1-P	Field mustard	plastid	61.89	59.21
CDX77518	Canola	plastid	61.89	59.21
EES08771	Sorghum	plastid	64.53	58.97
TraesCS2D01G150500.1	Wheat	plastid	61.13	58.48
HORVU0Hr1G039090.1	Barley	plastid	60.75	58.12
TraesCS2B01G171300.1	Wheat	plastid	60.38	57.97
AT3G23400.1	Thale cress	plastid	60.0	55.99
Os05t0304200-01	Rice	cytosol	17.74	29.94
Os05t0228900-01	Rice	cytosol	11.7	18.56

Protein Annotations

EMBL:ACUP02012746	EMBL:AY383621	EnsemblPlants:KRG92362	EnsemblPlantsGene:GLYMA_20G207100	EntrezGene:548055	InterPro:PAP/fibrillin_dom
ncoils:Coil	PANTHER:PTHR31906	PANTHER:PTHR31906:SF15	PFAM:PF04755	ProteinID:KRG92362	ProteinID:KRG92362.1
SEG:seg	UniParc:UPI0000495FC0	UniProt:Q5QJB6	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr20:+:44403238..44404808

Molecular Weight (calculated)

28433.1 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.117

Length

265 amino acids

Sequence
(BLAST)

001: MASLNLLPHP PLFSSFLHRP HCNTHLLLTP KPSQRRPSLV VKSTVGVADP SPSSSSYAGD TSDSISSLKL NLLSAVSGLN RGLAASEDDL RKADDAAKEL
101: EAAGGLVDLS LGLDNLQGRW KLIYSSAFSS RTLGGSRPGP PIGRLLPITL GQVFQRIDIL SKDFDNIVEL QLGAPWPLPP LEATATLAHK FELIGSSKIK
201: IVFEKTTVKT AGNLSQLPPL EVPRIPDALR PPSNTGSGEF EVTYLDSDTR ITRGDRGELR VFVIA

Best Arabidopsis Sequence Match ( AT3G23400.1 )
(BLAST)

001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA

Arabidopsis Description

PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.