Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0595200-01 | Rice | plastid | 38.22 | 22.22 |
| KRH34425 | Soybean | plastid | 30.57 | 20.08 |
| Zm00001d007581_P001 | Maize | plastid | 33.76 | 19.49 |
| VIT_05s0049g01360.t01 | Wine grape | plastid | 33.76 | 18.09 |
| Bra014946.1-P | Field mustard | plastid | 31.85 | 18.05 |
| CDX77518 | Canola | plastid | 31.85 | 18.05 |
| PGSC0003DMT400044209 | Potato | plastid | 31.21 | 17.82 |
| Solyc09g090330.2.1 | Tomato | plastid | 31.21 | 17.75 |
| KRG92362 | Soybean | nucleus, plastid | 29.94 | 17.74 |
| EES08771 | Sorghum | plastid | 32.48 | 17.59 |
| CDX85096 | Canola | plastid | 30.57 | 17.58 |
| GSMUA_Achr10P... | Banana | plastid | 30.57 | 17.45 |
| AT3G23400.1 | Thale cress | plastid | 30.57 | 16.9 |
| TraesCS2B01G171300.1 | Wheat | plastid | 29.3 | 16.67 |
| HORVU0Hr1G039090.1 | Barley | plastid | 29.3 | 16.61 |
| TraesCS2D01G150500.1 | Wheat | plastid | 28.66 | 16.25 |
| TraesCS2A01G145900.1 | Wheat | plastid | 28.03 | 16.0 |
| Os05t0228900-01 | Rice | cytosol | 8.92 | 8.38 |
Protein Annotations
| EnsemblPlants:Os05t0304200-01 | EnsemblPlantsGene:Os05g0304200 | InterPro:PAP/fibrillin_dom | PANTHER:PTHR31906 | PANTHER:PTHR31906:SF15 | PFAM:PF04755 |
| ProteinID:BAH93062.1 | ProteinID:BAS93251.1 | SEG:seg | UniParc:UPI0001B66189 | UniProt:C7J327 | MapMan:35.1 |
Description
PAP fibrillin family protein. (Os05t0304200-01)
Coordinates
chr5:-:13709153..13711853
Molecular Weight (calculated)
16808.0 Da
IEP (calculated)
10.241
GRAVY (calculated)
-0.284
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: SPNTQTLDTG AEQEEAYGCG GGEPPSRRLR RWRGRTTRRR RAAGSPRSRS AVGPESVAAW RLTATARTRA CRTGGCSSGF PWSADGSSTH PPATTVARLL
101: PITLGQVFQR IDVVSKDFGN IVDVELGGPW LLLPVEVMAT LAHKFGIIGE VGFCVQC
101: PITLGQVFQR IDVVSKDFGN IVDVELGGPW LLLPVEVMAT LAHKFGIIGE VGFCVQC
001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGLHFPFS H
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGLHFPFS H
Arabidopsis Description
PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.