Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20363867
plastid: 22908117 plastid: 26371478 nucleus: 28394025 endoplasmic reticulum: 29145071 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044209 | Potato | plastid | 93.12 | 93.45 |
| KRG92362 | Soybean | nucleus, plastid | 67.39 | 70.19 |
| Zm00001d007581_P001 | Maize | plastid | 64.13 | 65.07 |
| KRH34425 | Soybean | plastid | 55.8 | 64.44 |
| Os11t0595200-01 | Rice | plastid | 61.96 | 63.33 |
| VIT_05s0049g01360.t01 | Wine grape | plastid | 67.03 | 63.14 |
| GSMUA_Achr10P... | Banana | plastid | 61.96 | 62.18 |
| Bra014946.1-P | Field mustard | plastid | 62.32 | 62.09 |
| CDX77518 | Canola | plastid | 62.32 | 62.09 |
| CDX85096 | Canola | plastid | 61.23 | 61.9 |
| TraesCS2A01G145900.1 | Wheat | plastid | 57.97 | 58.18 |
| HORVU0Hr1G039090.1 | Barley | plastid | 58.33 | 58.12 |
| EES08771 | Sorghum | plastid | 60.87 | 57.93 |
| TraesCS2B01G171300.1 | Wheat | plastid | 57.25 | 57.25 |
| TraesCS2D01G150500.1 | Wheat | plastid | 57.25 | 57.04 |
| AT3G23400.1 | Thale cress | plastid | 57.97 | 56.34 |
| Os05t0304200-01 | Rice | cytosol | 17.75 | 31.21 |
| Os05t0228900-01 | Rice | cytosol | 10.14 | 16.77 |
Protein Annotations
| EMBL:AY383623 | EnsemblPlants:Solyc09g090330.2.1 | EnsemblPlantsGene:Solyc09g090330.2 | InterPro:PAP/fibrillin_dom | ncoils:Coil | PANTHER:PTHR31906 |
| PANTHER:PTHR31906:SF15 | PFAM:PF04755 | SEG:seg | UniParc:UPI0000495FC2 | UniProt:Q5QJB4 | MapMan:35.1 |
Description
Harpin binding protein 1 [Source:UniProtKB/TrEMBL;Acc:Q5QJB4]
Coordinates
chr9:-:69841027..69845703
Molecular Weight (calculated)
30084.8 Da
IEP (calculated)
6.678
GRAVY (calculated)
-0.283
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLLHSRLP LSHNHSLSNS CQSFPCHLPG RSKRSTQRLL EERSYDSKRS LVCQSGIDEV TFIEPPGSKE AEAELIGSLK LKLLSAVSGL NRGLAASEDD
101: LKKADEAAKE LESCAGAVDL AADLDKLQGR WKLIYSSAFS SRTLGGSRPG PPTGRLLPIT LGQVFQRIDV LSKDFDNIVE LELGAPWPFP PVEATATLAH
201: KFELIGSSTI KIIFEKTTVK TTGNLSQLPP LEVPRIPDQF RPPSNTGSGE FEVTYIDSDT RVTRGDRGEL RVFVIS
101: LKKADEAAKE LESCAGAVDL AADLDKLQGR WKLIYSSAFS SRTLGGSRPG PPTGRLLPIT LGQVFQRIDV LSKDFDNIVE LELGAPWPFP PVEATATLAH
201: KFELIGSSTI KIIFEKTTVK TTGNLSQLPP LEVPRIPDQF RPPSNTGSGE FEVTYIDSDT RVTRGDRGEL RVFVIS
001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA
Arabidopsis Description
PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.