Factsheet for TraesCS2D01G150500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 23683508

msms PMID: 23683508 doi

ZH He, HW Li, Y Shen, ZS Li, H Mi

National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G171300.1	Wheat	plastid	96.39	96.74
TraesCS2A01G145900.1	Wheat	plastid	95.31	96.0
HORVU0Hr1G039090.1	Barley	plastid	95.31	95.31
Zm00001d007581_P001	Maize	plastid	71.12	72.43
Os11t0595200-01	Rice	plastid	70.4	72.22
EES08771	Sorghum	plastid	66.79	63.79
KRG92362	Soybean	nucleus, plastid	58.48	61.13
KRH34425	Soybean	plastid	50.18	58.16
Solyc09g090330.2.1	Tomato	plastid	57.04	57.25
PGSC0003DMT400044209	Potato	plastid	56.32	56.73
VIT_05s0049g01360.t01	Wine grape	plastid	59.57	56.31
GSMUA_Achr10P...	Banana	plastid	55.6	56.0
CDX77518	Canola	plastid	54.51	54.51
Bra014946.1-P	Field mustard	plastid	54.51	54.51
CDX85096	Canola	plastid	53.07	53.85
AT3G23400.1	Thale cress	plastid	54.15	52.82
Os05t0304200-01	Rice	cytosol	16.25	28.66

Protein Annotations

EnsemblPlants:TraesCS2D01G150500.1	EnsemblPlantsGene:TraesCS2D01G150500	InterPro:PAP/fibrillin_dom	ncoils:Coil	PANTHER:PTHR31906	PANTHER:PTHR31906:SF15
PFAM:PF04755	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr2D:+:93046657..93047781

Molecular Weight (calculated)

29408.8 Da

IEP (calculated)

10.037

GRAVY (calculated)

-0.277

Length

277 amino acids

Sequence
(BLAST)

001: MAMASPSWSS CCASTSTRPL PSPPASSKSR NPWRASSGRR SASGGKRRQQ LSIRAVAAPS SAVDYSDTAA GAGDVPSLKI KLLSAVAGLN RGLAASQEDL
101: DRADAAARQL EAAAPAPVDL AKDLDKLQGR WRLVYSSAFS SRTLGGSRPG PPTGRLLPIT LGQVFQRIDV VSQDFDNIVE LELGAPWPLP PVEATATLAH
201: KFEITGIASI KINFDKTTVK TKGNLSQLPL LEVPRIPDSL RPSTSNTGSG EFDVTYLDDD TRITRGDRGE LRVFVVS

Best Arabidopsis Sequence Match ( AT3G23400.1 )
(BLAST)

001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA

Arabidopsis Description

PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.